PUBLICACIONES/PUBLICATIONS 2018

Publicaciones ISI

  1. Alcaman-Arias, M.E., Pedros-Alios, C., Tamames, J., Fernández, C., Perez-Pantoja, D., Vásquez, M., Diez, B. 2018. Diurnal Changes in Active Carbon. Frontiers in Microbiology, 9: 2353. https://doi.org/10.3389/fmicb.2018.02353
  2. Avendaño-Herrera, R. 2018. Proper antibiotics use in the Chilean salmon industry: Policy and technology bottlenecks. 495: 803-805 https://doi.org/10.1016/j.aquaculture.2018.06.072
  3. Bethke, J., Yáñez, A.J., Avendaño-Herrera, R. 2018. Comparative Genomic Analysis of Two Chilean Renibacterium salmoninarum Isolates and the type strain ATCC 33209. GenomeBiology and Evolution, 10: 1816-1822. https://doi.org/10.1093/gbe/evy138
  4. Boltaña, S., Aguilar, A., Sanhueza, N., Donoso, A., Mercado, L., Imarai, M., Mackenzie S. 2018. Behavioural fever drives epigenetics modulation of the immune response in fish. Frontiers in Immunology, 4: 1241.
    https://doi.org/10.3389/fimmu.2018.01241
  5. Boltaña, S., Sanhueza, N., Donoso, A., Aguilar, A., Crespo, D., Vergara, D., Arriagada G., Morales-Lange, B., Mercado, L., Rey, S., Tort, L., Mackenzie, S. 2018. The expression of TRPV channels, prostaglandin E2 and pro-inflammatory cytokines during behavioural fever in fish. Brain Behavior and Immunity, 81: 169-181. https://doi.org/1016/j.bbi.2018.03.023
  6. Bridel, S., Olsen, A., Nilsen, H., Bernardet, J-F., Achaz, G., Avendaño-Herrera, R., Duchaud, E. 2018. Comparative genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” highlights intricate evolution of fish-pathogenic species. Genome Biology and Evolution. Genome Biology and Evolution, 10(2): 452-457. https://doi.org/10.1093/gbe/evy020
  7. Calquín, P., Ruiz, P., Oliver, C., Sánchez, P, Haro, R., Oliva, H., Vargas-Chacoff, L., Avendaño-Herrera, R., Yáñez, A.J. 2018. Physiological evidence that Piscirickettsia salmonis produces siderophores and uses iron from different sources. Journal Fish Diseases, 41: 553-558. https://doi.org/10.1111/jfd.12745
  8. Castrejón-Najera, J., Ortega, C., Fajardo, R., Irgang, R., Tapia-Cammas, D., Poblete-Morales, M., Avendaño-Herrera, R. 2018. Isolation characterization, virulence potential of Weissella ceti responsible for weissellosis outbreak in rainbow trout (Oncorhynchus mykiss) cultured in Mexico. Transboundary and Emerging Diseases, 65: 1401-1407. https://doi.org/10.1111/tbed.12978
  9. Ceballos, A., Dresdner, J., Quiroga, M. 2018. Does the location of salmon farms contribute to the reduction of poverty in remote coastal areas? An impact assessment using a Chilean case study. Food Policy, 75: 68-79. https://doi.org/10.1016/j.foodpol.2018.01.009
  10. Chávez, C., J. Murphy, Stranlund, J. 2018. Managing and Defending the Commons: Experimental Evidence from TURFs in Chile. Journal of Environmental Economics and Management, 91: 229-246. https://doi.org/doi.org/10.1016/j.jeem.2018.07.00
  11. Chávez, G., Quiroga, M., Dresdner, J. 2018. The Effect of Collective Rights-Based Management on Technical Efficiency: The Case of Chile’s Common Sardine and Anchovy Fishery. Marine Resource Economics, 33: 87-112. http://dx.doi.org/10.1086/696130
  12. De Anna, J.S., Leggieri, L.R., Arias Darraz, L., Cárcamo, J.G., Venturino, A., Luquet, C.M. 2018. Effects of sequential exposure to water accommodated fraction of crude oil and chlorpyrifos on molecular and biochemical biomarkers in rainbow trout. Comparative Biochemistry and Physiology- Part C: Toxicology & Pharmacology, 212: 47-55. https://doi.org/10.1016/j.cbpc.2018.07.003
  13. Detree, C., Gallardo-Escárate, C. 2018. Single and repetitive microplastics exposures induce immune system modulation and homeostasis alteration in the edible mussel Mytilus galloprovincialis. Fish & Shellfish Immunology, 83: 52-60.
    https://doi.org/1016/j.fsi.2018.09.018
  14. Duchaud, E., Rochat, T., Habib, C., Barbier, P., Loux, V., Guérin, C., Dalsgaard, I., Madsen, L., Nilsen, H., Sundell, K., Wiklund, T., Strepparava, N., Wahli, T., Caburlotto, G., Manfrin, A., Wiens, G., Fujiwara-Nagata, E., Avendaño-Herrera, R., Bernardet, J.F., Nicolas, P. 2018. Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum. Microbial Physiology and Metabolism. Frontiers in Microbiology, 9: 138. https://doi.org/10.3389/fmicb.2018.00138
  15. Fernández, F.J. Ponce, R.D., Vásquez-Lavinca, F., Figueroa Y., Gelcich, F., Dresdner, J. 2018. Exploring typologies of artisanal mussel seed producers in southern Chile. Ocean & Coastal Management, 158: 24-31.
    https://doi.org/1016/j.ocecoaman.2018.03.013
  16. Gonçalves, AT., Núñez-Acuña, G., Détrée, C., Gallardo-Escárate, C. 2018. Coding/non-coding cross-talk in intestinal epithelium transcriptome gives insights on how fish respond to stocking density. 29: 14-23. https://doi.org/10.1016/j.cbd.2018.10.005
  17. Herrera, J., Cornejo, P., Sepúlveda, H.H., Artal, O., Quiñones, R. 2018. A novel approach to assess the hydrodynamic effects of a salmon farm in a Patagonian channel: Coupling between regional ocean modeling and high resolution les simulation. Aquaculture, 495: 115-129. https://doi.org/10.1016/j.aquaculture.2018.05.003
  18. Jacob, B.G., Tapia, F.J., Quiñones, R.A., Montes, R.M., Sobarzo, M., Schneider, W., Daneri, G., Morales, C.E., Montero, P., González, H.E. 2018. Major changes in diatom abundance, productivity, and net community metabolism in a windier and dryer coastal climate in the southern Humboldt Current. Progress in Oceanography, 168: 196-209. https://doi.org/10.1016/j.aquaculture.2018.05.003
  19. León-Muñoz, J., Urbina, M., Garreaud, R., Iriarte, J.L. 2018. Hydroclimatic conditions trigger record harmful algal bloom in western Patagonia (summer 2016). Nature, Scientific Reports, 8: 1-10. https://doi.org/1038/s41598-018-19461-4 1
  20. Levipan, HA., Quezada, J., Avendaño-Herrera, R. 2018. Stress Tolerance-Related Genetic Traits of Fish Pathogen Flavobacterium psychrophilum in a Mature Biofilm. Microbial Physiology and Metabolism. Frontiers in Microbiology, 9: 18.
    https://doi.org/10.3389/fmicb.2018.00018
  21. Mendez, K.N., Zuloaga, R., Valenzuela, C.A., Bastias-Molina, M., Meneses, C., Vizoso, P., Valdés, J. A., Molina, A. 2018. RNA-seq analysis of compensatory growth in the skeletal muscle of fine flounder (Paralichthys adspersus). Aquaculture, 490: 270-280. https://doi.org/1016/j.aquaculture.2018.02.048
  22. Molina, V., Eissler, Y., Cornejo, M., Galand, P.E., Dorador, C., Hengst, M., Fernández, C., Francois, J.P. 2018. Distribution of greenhouse gases in hyper-arid and arid areas of northern Chile and the contribution of the high altitude wetland microbiome (Salar de Huasco, Chile). Antonie van Leeuwenhoek, 111: 1421-1432. https://doi.org/10.1007/s10482-018-1078-9
  23. Montes, R., Rojas, X., Artacho, P., Tello, B., Quiñones, R. 2018. Quantifying harmful algal bloom thresholds for farmed salmon in southern Chile. Harmful Algae, 77: 55-65. https://doi.org/10.1016/j.hal.2018.05.004
  24. Muñoz-Flores, C., Astuya, A., Roa, F.J., Sánchez, O., Toledo, J.R. 2018. Activation of membrane-bound and soluble Toll-like Receptors 5 in Salmo salar depends on the MyD88 signalling pathway. Biochimica et Biophysica Acta – General Subjects, 1862: 2215-2225. https://doi.org/10.1016/j.bbagen.2018.07.008
  25. Núñez-Acuña, G., Gallardo-Escárate, C., Fields, D., Shema, S., Skiftesvik, AB., Ormazábal, I., Browman, H. 2018. The Atlantic salmon (Salmo salar) antimicrobial peptide cathelicidin-2 is a molecular host-associated cue for the salmon louse (Lepeophtheirus salmonis). Scientific Report, 8: 13738. https://doi.org/10.1038/s41598-018-31885-6.
  26. Ortega, C., García, I., Irgang, R., Fajardo, R., Tapia-Cammas, D., Acosta, J., Avendaño-Herrera, R. 2018. First identification and characterization of Streptococcus iniae obtained from tilapia (Oreochromis aureus) farmed in Mexico. Journal of Fish Diseases, 41(5): 773-782. https://doi.org/1111/jfd.12775
  27. Rain-Franco, A., Rojas, C., Fernández, C. 2018. Potential effect of pesticides currently used in salmon farming on photo and chemoautotrophic carbon uptake in central – southern Chile. Aquaculture, 486, 271-284. https://doi.org/10.1016/j.aquaculture.2017.12.048
  28. Rain-Franco, A., Sobarzo, M., Caparros, J., Fernández, C. 2018. Variability of chromophoric dissolved organic matter in three freshwater-influenced systems along central-southern Chile. Progress in oceanography. In press.
    https://doi.org/10.1016/j.pocean.2018.09.009
  29. Rojas, V., Morales-Lange, B., Avendaño-Herrera, R., Poblete-Morales, M., Tapia-Cammas, D., Guzmán, F., Marshall, S.H., Mercado, L. 2018. Detection of muscle-specific creatine kinase expression as physiological indicator for Atlantic salmon (Salmo salar L) skeletal muscle damage. Aquaculture, 496: 66-72. https://doi.org/10.1016/j.aquaculture.2018.07.006
  30. Salazar, C., Figueroa, J., Fuentes, R. 2018. Innovation in small-scale aquaculture in Chile. Aquaculture Economics & Management, 33: 81-112. https://doi.org/1080/13657305.2017.1409293
  31. Saldías, G., Sobarzo, M., Quiñones, R. 2018. Freshwater structure and its seasonal variability off western Patagonia. Progress In Oceanography, 174: 143-153 https://doi.org/10.1016/j.hal.2018.05.004
  32. Sánchez, P., Oliver, C., Hernández, M., Cortés, M., Rauch, M., Valenzuela, K., Garduño, R.A., Avendaño-Herrera, R., Yáñez, A.J. 2018. In vitro genomic and proteomic evidence of a type IV pili-like structure in the fish pathogen Piscirickettsia salmonis. FEMS Microbiology Letters, 365(16): https://doi.org/10.1093/femsle/fny169.
  33. Sanhueza, N., Donoso, A., Aguilar, A., Farlora, R., Míguez, J.M., Tort, L., Valdés, J.A., Boltaña, S. 2018. Thermal modulation of monoamine levels influence the fish stress and welfare. Frontiers in Endocrinology, section Experimental Endocrinology. 9: 717. https://doi.org/10.3389/fendo.2018.00717
  34. Sanhueza-Guevara, S., Neira-Osses, K., Rojas, C., Geneviere, A.M., Fernández, C. 2018. Effects of three pesticides used to control sea lice on the early development of Choromytilus chorus, Sphaerechinus granularis, and Paracentrotus lividus. Latin American Journal of Aquatic Research, 46: 969-980. https://doi.org/10.3856/vol46-issue5-fulltext-10
  35. Sobarzo, M., Bravo, L., Iturra, C., Troncoso, R., Riquelme, A., Campos, P., Agurto, C. 2018. Hydrodynamics of a channel occupied by the aquaculture industry in southern Chile: Implications for connectivity between farms. Aquaculture Environment Interactions, 10:291-307. https://doi.org /10.3354/aei00268.
  36. Tarifeño-Saldivia, E., Aguilar, A, Contreras, D, Mercado, L, Morales-Lange, B, Marquez, K, Henríquez, A, Riquelme-Vidal, C, Boltaña, S. 2018. Iron overload is associated with oxidative stress and nutritional immunity during viral infection in fish, 5: 1249. https://doi.org/10.3389/fimmu.2018.01296
  37. Valdés, V., Carlotti, F., Escribano, R., Donoso, K., Pagano, M., Molina, V., Fernández, C. 2018. Nitrogen and phosphorus recycling mediated by copepods and response of bacterioplankton community from three contrasting areas in the western tropical South Pacific (20ºS). Biogeosciences, 15: 6019-6032. https://doi.org/10.5194/bg-15-6019-2018
  38. Valdés, V., Fernández C., Molina, V., Escribano, R. 2018. Nitrogen excretion by copepods and its effect on ammonia-oxidizing. Limnology and Oceanography, 63: 278-294. https://doi.org/ 1002/lno.10629
  39. Valenzuela, C.A., Zuloaga, R., Mercado, L., Einarsdottir, I.E., Björnsson, B.T., Valdés, J.A., Molina, A. 2018. Chronic stress inhibits growth and induces proteolytic mechanisms through two different nonoverlapping pathways in the skeletal muscle of a teleost fish. American journal of physiology-regulatory integrative and comparative physiology, 314: R102-R113.
    https://doi.org/10.1152/ajpregu.00009.2017
  40. Valenzuela-Miranda, D., Gallardo-Escárate, C. 2018. Dual RNA-Seq Uncovers Metabolic Amino Acids Dependency of the Intracellular Bacterium Piscirickettsia salmonis Infecting Atlantic Salmon. Frontiers in Microbiology, 9: 2877.
    https://doi.org/10.3389/fmicb.2018.02877
  41. Valenzuela-Muñoz, V., Valenzuela-Miranda, D., Gallardo-Escárate, C. 2018. Comparative analysis of long non-coding RNAs in Atlantic and Coho salmon reveals divergent transcriptome responses associated with immunity and tissue repair during sea lice infestation. Developmental & Comparative Immunology. 87: 36-50. https://doi.org/1016/j.dci.2018.05.016
  42. Zuloaga, R., Almarza, O., Valdés, J.A., Molina, A., Pulgar, J. 2018. Oceanographic upwelling conditions influence signaling pathways involved in muscle growth of intertidal fish. Comparative biochemistry and physiology – Part B biochemistry & molecular biology, 218: 37-43. https://doi.org/10.1016/j.cbpb.2018.02.001

Publicaciones No ISI

  1. Avendaño-Herrera, R. 2018. Integration, financing and application of research in Chile. Salmonxpert, 60:8-9.
  2. Avendaño-Herrera, R., Figueroa, J., Gómez, F., Marshall, S., Olivares, J. 2018. Deciphering the life cycle of Piscirickettsia salmonis. Salmonxpert, 63:54-55.
  3. Beveridge, M.C.M., Dabbadie, L., Soto, D., Ross, L.G., Bueno, P.B., Aguilar-Manjarrez, J. Barange, M., Bahri, T., Beveridge, M.C.M., Cochrane, K.L., Funge-Smith, S., Poulain, F. 2019. Impacts of climate change on fisheries and aquaculture Synthesis of current knowledge, adaptation and mitigation options. Chapter 22: Climate change and aquaculture: interactions with fisheries and agriculture. 491-500. FAO Fisheries and Aquaculture Technical Paper 627. http://www.fao.org/3/i9705en/i9705en.pdf
  4. Dabbadie, L., Aguilar-Manjarrez, J., Beveridge, M.C.M., Bueno, P.B., Ross, L.G., Soto, D., Barange, M., Bahri, T., Beveridge, M.C.M., Cochrane, K.L., Funge-Smith, S., Poulain, F. 2019. Impacts of climate change on fisheries and aquaculture Synthesis of current knowledge, adaptation and mitigation options. Chapter 20: Effects of climate change on aquaculture: drivers, impacts and policies, 449-464. FAO Fisheries and Aquaculture Technical Paper 627. http://www.fao.org/3/i9705en/i9705en.pdf
  5. Iturriaga, M., Brisa, M., Poblete-Morales, M., Feijoo, C.G., Reyes, A., Molina, A., Avendaño-Herrera, R., Valdés, J.A. 2018. Cytotoxic activity of Flavobacterium psychrophilum in skeletal muscle cells of rainbow trout (Oncorhynchus mykiss). Salmonxpert, 61:40-43.
  6. Romero, A., Santibáñez, N., Vera, F., Vargas, R., Vega, M., Yáñez, A., Cárcamo, j.G., Enríquez, R., González-Stegmaier, R., Olivera, C., Pérez, T., Figueroa, J. 2018. Production of biofilm in bacteria and its relationship with fish diseases. Versión Diferente, 29:34-36.
  7. Sobarzo, M., Bravo, L., Iturra, C., Troncoso, A., Riquelme, R., Campos, P. 2018. Conectividad entre Centros de Acuicultura: La Influencia de las Mareas. Versión Diferente, 28.
  8. Soto, D, Ross, L.G., Handisyde, N., Bueno, P.B., Beveridge, M.C.M., Dabbadie, L., Aguilar-Manjarrez, J., Cai, J., Pongthanapanich, T. Barange, M., Bahri, T., Beveridge, M.C.M., Cochrane, K.L., Funge-Smith, S., Poulain, F. Impacts of climate change on fisheries and aquaculture Synthesis of current knowledge, adaptation and mitigation options. Chapter 21: Climate change and aquaculture: vulnerability and adaptation options. 465-490. FAO Fisheries and Aquaculture Technical Paper 627. http://www.fao.org/3/i9705en/i9705en.pdf
  9. Tapia-Cammas, D., Aedo, A., Saldivia, P., Irgang, R., Avendaño-Herrera, R. 2018. Serotype O2 of Yersinia ruckeri in Chilean culture of Coho salmon (Oncorhynchus kisutch). Salmonxpert https://www.salmonexpert.cl/article/serotipo-o2-de-yersinia-ruckeri-en-cultivo-chileno-de-salmon-coho-oncorhynchus-kisutch/
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