1. Valenzuela-Muñoz V., Valenzuela-Miranda, D., Gallardo-Escárate, C. (2018). Comparative analysis of long non-coding RNAs in Atlantic and Coho salmon reveals divergent transcriptome responses associated with immunity and tissue repair during sea lice infestation. Developmental & Comparative Immunology. Vol. 87, p. 36-50.
  2. Detree, C., Gallardo-Escárate, C.  (2018) Single and repetitive microplastics exposures induce immune system modulation and homeostasis alteration in the edible mussel Mytilus galloprovincialis. Fish & Shellfish Immunology. Vol. 83, p. 52-60.
  3. Gonçalves, AT., Núñez-Acuña, G., Détrée, C., Gallardo-Escárate, C. (2018). Coding/non-coding cross-talk in intestinal epithelium transcriptome gives insights on how fish respond to stocking density. Vol 29, p. 14-23.
  4. Valenzuela-Miranda, D., Gallardo-Escárate, C. (2018). Dual RNA-Seq Uncovers Metabolic Amino Acids Dependency of the Intracellular Bacterium Piscirickettsia salmonis Infecting Atlantic Salmon. Frontiers in Microbiology . Vol.9, p.2877.
  5. Núñez-Acuña, G., Gallardo-Escárate, C., Fields, D., Shema, S., Skiftesvik, AB., Ormazábal, I., Browman, H. (2018). The Atlantic salmon (Salmo salar) antimicrobial peptide cathelicidin-2 is a molecular host-associated cue for the salmon louse (Lepeophtheirus salmonis). Scientific Report. Vol 8, p. 13738.
  6. Boltaña S., Sanhueza N, Donoso A, Aguilar A, Crespo D, Vergara D, Arriagada G, Morales-Lange B, Mercado L, Rey S, Tort L, Mackenzie S. (2018). The expression of TRPV channels, prostaglandin E2 and pro-inflammatory cytokines during behavioural fever in fish. Brain Behavior and Immunity. Vol. 81, p. 169-181.
  7. Boltaña S., Aguilar A., Sanhueza N., Donoso A., Mercado L., Imarai M., Mackenzie S. (2018). Behavioural fever drives epigenetics modulation of the immune response in fish. Frontiers in Immunology. Vol. 4, p. 1241.
  8. Tarifeño-Saldivia E., Aguilar A, Contreras D, Mercado L, Morales-Lange B, Marquez K, Henríquez A, Riquelme-Vidal C, Boltaña S. (2018). Iron overload is associated with oxidative stress and nutritional immunity during viral infection in fish. Vol. 5, p. 1249.
  9. Sanhueza N., Donoso A., Aguilar A., Farlora R., Míguez J.M., Tort L., Valdés J.A., Boltana S. (2018). Thermal modulation of monoamine levels influence the fish stress and welfare. Frontiers in Endocrinology, section Experimental Endocrinology. Vol.9, p. 717.
  10. Valenzuela C.A., Zuloaga R., Mercado L., Einarsdottir I.E., Björnsson B.T., Valdés J.A., Molina A. Chronic stress inhibits growth and induces proteolytic mechanisms through two different nonoverlapping pathways in the skeletal muscle of a teleost fish. American journal of physiology-regulatory integrative and comparative physiology. Vol. 314, R102_R113.
  11. Zuloaga R., Almarza O., Valdés J.A., Molina A., Pulgar J. (2018). Oceanographic upwelling conditions influence signaling pathways involved in muscle growth of intertidal fish. Comparative biochemistry and physiology – part b biochemistry & molecular biology. Vol. 218, p. 37-43.
  12. Mendez, K. N., Zuloaga, R., Valenzuela, C. A., Bastias-Molina, M., Meneses, C., Vizoso, P., Valdés, J. A2. & Molina, A. (2018). RNA-seq analysis of compensatory growth in the skeletal muscle of fine flounder (Paralichthys adspersus). Aquaculture. Vol. 490, p. 270-280.
  13. Avendaño-Herrera, R. (2018) Proper antibiotics use in the Chilean salmon industry: Policy and technology bottlenecks.
  14. Rojas V., Morales-Lange B, Avendaño-Herrera R, Poblete-Morales M, Tapia-Cammas D, Guzmán F, Marshall SH, Mercado L. (2018). Detection of muscle-specific creatine kinase expression as physiological indicator for Atlantic salmon (Salmo salar L) skeletal muscle damage. Aquaculture. Vol 496, p. 66-72.
  15. Bethke, J., Yáñez, A.J., Avendaño-Herrera, R. (2018) Comparative Genomic Analysis of Two Chilean Renibacterium salmoninarum Isolates and the type strain ATCC 33209. GenomeBiology and Evolution, evy 138.
  16. Duchaud, E., Rochat, T., Habib, C., Barbier, P., Loux, V., Guérin, C., Dalsgaard, I., Madsen, L., Nilsen, H., Sundell, K., Wiklund, T., Strepparava, N., Wahli, T., Caburlotto, G., Manfrin, A., Wiens, G., Fujiwara-Nagata, E., Avendaño-Herrera, R., Bernardet, J-F & NICOLAS, P. (2018). Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum. Microbial Physiology and Metabolism. Frontiers in Microbiology, Volume 9, Article 138.
  17. Levipan, HA., Quezada, J & Avendaño-Herrera, R. (2018). Stress Tolerance-Related Genetic Traits of Fish Pathogen Flavobacterium psychrophilum in a Mature Biofilm. Microbial Physiology and Metabolism. Frontiers in Microbiology, Volume 9, Article 18.
  18. Calquín P., Ruiz P., Oliver C., Sánchez P, Haro R., Oliva H., Vargas-Chacoff L., Avendaño-Herrera R., Yáñez A.J. (2018). Physiological evidence that Piscirickettsia salmonis produces siderophores and uses iron from different sources. Journal Fish Diseases. Vol. 41, p. 553-558
  19. Sánchez P., Oliver C., Hernández M., Cortés M., Cecilia Rauch M., Valenzuela K., Garduño R.A., Avendaño-Herrera R., Yáñez A.J. (2018). In vitro genomic and proteomic evidence of a type IV pili-like structure in the fish pathogen Piscirickettsia salmonis. FEMS Microbiology Letters. Vol. 365(16).
  20. Bridel, S., Olsen, A., Nilsen, H., Bernardet, J-F., Achaz, G., Avendaño-Herrera, R & Duchaud, E. (2018). Comparative genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” highlights intricate evolution of fish-pathogenic species. Genome Biology and Evolution. Genome Biology and Evolution, Volume 10, Issue 2, Pages 452-457.
  21. Ortega, C., García, I., Irgang, R., Fajardo, R., Tapia-Cammas, D., Acosta, J., Avendaño-Herrera, R. (2018). First identification and characterization of Streptococcus iniae obtained from tilapia (Oreochromis aureus) farmed in Mexico. Journal of Fish Diseases, Volume 41, Issue 5, 773-782.
  22. Castrejón-Najera J., Ortega C., Fajardo R., Irgang R., Tapia-Cammas D., Poblete-Morales M., Avendaño-Herrera R. (2018). Isolation characterization, virulence potential of Weissella ceti responsible for weissellosis outbreak in rainbow trout (Oncorhynchus mykiss) cultured in Mexico. Transboundary and Emerging Diseases. Vol. 65, p. 1401-1407.
  23. De Anna J.S., Leggieri L.R., Arias Darraz L., Cárcamo J.G., Venturino A & Luquet C.M. (2018). Effects of sequential exposure to water accommodated fraction of crude oil and chlorpyrifos on molecular and biochemical biomarkers in rainbow trout. Comparative Biochemistry and Physiology – Part C: Toxicology & Pharmacology. Vol. 212, p. 47-55.
  24. Muñoz-Flores Carolina, Allisson Astuya, Francisco J. Roa, Oliberto Sánchez, Jorge R. Toledo. (2018). Activation of membrane-bound and soluble Toll-like Receptors 5 in Salmo salar depends on the MyD88 signalling pathway. Biochimica et Biophysica Acta – General Subjects. Vol. 1862, p. 2215-2225.
  25. Jorge León-Muñoz, Mauricio Urbina, Rene Garreaud, José Luis Iriarte. 2018. Hydroclimatic conditions trigger record harmful algal bloom in western Patagonia (summer 2016). Nature, Scientific Reports. Vol. 8, p.1-10.
  26. Sanhueza-Guevara, S., Neira.Osses, K., Rojas, C., Geneviere, A.M., Fernandez, C. (2018). Effects of three pesticides used to control sea lice on the early development of Choromytilus chorus, Sphaerechinus granularis, and Paracentrotus lividus. Latin American Journal of Aquatic Research. Vol. 46, p. 969-980.
  27. Alcaman-Arias, ME1., Pedros-Alios, C., Tamames, J., Fernandez, C., Perez-Pantoja, D., Vasquez, M., Diez, B2. (2018). Diurnal Changes in Active Carbon. Frontiers in Microbiology. Vol. 9.
  28. Molina, V., Eissler, Y., Cornejo, M., Galand, PE., Dorador, C., Hengst, M., Fernandez, C., Francois, JP. (2018). Distribution of greenhouse gases in hyper-arid and arid areas of northern Chile and the contribution of the high altitude wetland microbiome (Salar de Huasco, Chile). Antonie van Leeuwenhoek . Vol. 111, p. 1421-1432.
  29. Rain-Franco, A., Rojas, C & Fernández, C. (2018). Potential effect of pesticides currently used in salmon farming on photo and chemoautotrophic carbon uptake in central – southern Chile. Aquaculture, 486, 271-284.
  30. Valdés, V., François Carlotti, Ruben Escribano, Katty Donoso, Marc Pagano, Verónica Molina, and Camila Fernandez. (2018). Nitrogen and phosphorus recycling mediated by copepods and response of bacterioplankton community from three contrasting areas in the western tropical South Pacific (20ºS). Biogeosciences. Vol. 15, p. 6019-6032.
  31. Rain-Franco, A., Sobarzo, M., Caparros, J., Fernandez, C. (2018). Variability of chromophoric dissolved organic matter in three freshwater-influenced systems along central-southern Chile. Progress in oceanography. In press.
  32. Valdes, V., Fernandez C., Molina, V., Escribano, R. (2018). Nitrogen excretion by copepods and its effect on ammonia-oxidizing. Limnology and Oceanography. Vol. 63, p. 278-294.
  33.  Saldías, G., M. Sobarzo & R. Quiñones. (2018). Freshwater structure and its seasonal variability off western Patagonia. Progress In Oceanography. In Press.
  34. Sobarzo, M., L. Bravo, C. Iturra, A. Troncoso, R. Riquelme, P. Campos and C. Agurto. (2018). Hydrodynamics of a channel occupied by the aquaculture industry in southern Chile: Implications for connectivity between farms. Aquaculture Environment Interactions. Vol. 10, p.291-307.
  35. Montes, R., Rojas, X., Artacho, P., Tello, B., & Quiñones, R. (2018) Quantifying harmful algal bloom thresholds for farmed salmon in southern Chile. Harmful Algae, Volume 77, Pages 55-65.
  36. Jacob B.G., Tapia F.J., Quiñones R.A., Montes R.M., Sobarzo M., Schneider W., Daneri, G., Morales C.E., Montero P., González H.E. (2018). Major changes in diatom abundance, productivity, and net community metabolism in a windier and dryer coastal climate in the southern Humboldt Current. Progress in Oceanography. Vol. 168, p. 196-209.
  37. Herrera J., Cornejo P., Sepúlveda H.H., Artal O., Quiñones R. (2018). A novel approach to assess the hydrodynamic effects of a salmon farm in a Patagonian channel: Coupling between regional ocean modeling and high resolution les simulation. Aquaculture. Vol. 495, p. 115-129.
  38. Chávez1, C., J. Murphy, and J. Stranlund. (2018). Managing and Defending the Commons: Experimental Evidence from TURFs in Chile. Journal of Environmental Economics and Management. Vol 91, p. 229-246.
  39. Ceballos, A., Dresdner, J., & Quiroga, M. (2018) Does the location of salmon farms contribute to the reduction of poverty in remote coastal areas? An impact assessment using a Chilean case study. Food Policy, Volume 75, Pages 68-79.
  40. Francisco J. Fernández; Roberto D.Ponce; Felipe Vásquez-Lavinca; Yanina Figueroa; Fan Gelcich; Jorge Dresdner. (2018). Exploring typologies of artisanal mussel seed producers in southern Chile. Ocean & Coastal Management. Vol. 158, p. 24-31.
  41. Cesar Salazar, Marcela Jaime, Yanina Figueroa and Rodrigo Fuentes. (2018). Innovation in small-scale aquaculture in Chile. Aquaculture Economics & Management. Vol. 33, p. 81-112.
  42. Chávez, Gloria; Quiroga, Miguel; and Dresdner, Jorge. (2018). The Effect of Collective Rights-Based Management on Technical Efficiency:The Case of Chile’s Common Sardine and Anchovy Fishe. Marine Resource Economics. Vol. 33, p. 87-112.

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