PUBLICACIONES 2017

Publicaciones ISI

  1. Aballai V., Aedo J.E., Maldonado, J., Bastias-Molina, M., Silva, H., Meneses, C., Boltaña, S., Reyes, A., Molina, A., Valdés J.A. 2017. RNA-seq analysis of the head-kidney transcriptome response to handling-stress in the red cusk-eel (Genypterus chilensis). Comparative Biochemistry and Physiology, 24: 111-117. https://doi.org/10.1016/j.cbd.2017.09.002
  2. Avendaño-Herrera, R., Irgang, R., Tapia-Cammas, D. 2017. PCR procedure for detecting the fish pathogen Tenacibaculum dicentrarchi. Journal of Fish Diseases, 41: 715-719 https://doi.org/10.1111/jfd.12767
  3. Avendaño, R., Tapia, D., Aedo, A., Saldivia, P., Ortega, C., Irgang, R. 2017. Disease caused by Yersinia ruckeri serotype O2b found in Chilean-farmed coho salmon, Oncorhynchus kisutch (Walbaum, 1792). J. Fish. Dis., 40(2), 279-285. https://doi.org/10.1111/jfd.12502
  4. Avendaño-Herrera, R., Tobaj, J., Tobar, I., Fernández-Caro, C. 2017. Universal probe library assay for the detection of infectious pancreatic necrosis virus genogroups 1 and 5 in salmonid tissues. Aquaculture Research, 48(4), 1962-1967. https://doi.org/10.1111/are.12945
  5. Bethke, J., Avendaño-Herrera, R. 2017. Comparative genome analysis of two Streptoccocus phocae subspecies provides novel insights into pathogenicity. Marine Genomics, 31:53-61. https://doi.org/10.1016/j.margen.2016.09.005)
  6. Bethke, J., Quezada, J., Poblete-Morales, M., Irgang, R., Yáñez, A., Avendaño-Herrera, R. 2017. Biochemical, serological, and genetic characterisation of Renibacterium salmoninarum isolated from salmonids in Chile. Bulletin of the European Association of Fish Pathologists, 37: 167-177
  7. Boltaña, S., Sanhueza, N., Aguilar, A., Gallardo‐Escárate, C., Arriagada, G., Valdés, J.A., Soto, D., Quiñones, R.A. 2017.Influences of thermal environment on fish growth. Ecology and Evolution, 7(17): 6814-6825. https://doi.org/10.1002/ece3.3239]
  8. Calquín, P., Ruiz, P., Oliver, C., Sánchez, P., Haro, R., Oliva, H., Vargas-Chacoff, L., Avendaño-Herrera, R., Yáñez, A. J. 2017. Physiological evidence that Piscirickettsia salmonis produces siderophores and uses iron from different sources. Journal of Fish Diseases, 41:553-558. https://doi.org/10.1111/jfd.12745
  9. Cárcamo J.G., Aguilar, M.N., Carreño, C.F., Vera, T., Arias-Darraz, L., Figueroa, J.E., Romero, A.P., Álvarez, M., Yáñez, A.J. 2017. Consecutive emamectin benzoate and deltamethrin treatments affect the expressions and activities of detoxification enzymes in the rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology – Part C: Toxicology & Pharmacology, 191: 129-137. https://doi.org/10.1016/j.cbpc.2016.10.004
  10. Cárcamo, P.J., Hernández-Miranda, E., Veas, R., Quiñones, R.A. 2017. Macrofaunal community structure in Bahía Concepción (Chile) before and after the 8.8 Mw Maule mega-earthquake and tsunami. Marine Environmental Research, 130: 233-247. https://doi.org/10.1016/j.marenvres.2017.07.022.
  11. Cartes, C., Isla, A., Lagos, F., Castro, D., Muñoz, M., Yáñez, A., Haussmann, D., Figueroa, J. 2017. Search and analysis of genes involved in antibiotics resistance in chilean strains of Piscirickettsia salmonis. J. of Fish Diseases, 40(8):1025-1039. https://doi.org/10.1111/jfd.12579
  12. Castillo, Y., Ortega, C., Fajardo, R., Martínez, S., Valladares, B., Irgang, R., Poblete, M., Avendaño, R. 2017. First isolation and characterization of Flavobacterium psychrophilum from diseased rainbow trout (Oncorhynchus mykiss) farmed in Mexico. Bull. Eur. Fish. Pathol, 37(1), 19-26. https://doi.org/10.1016/j.fsi.2017.08.047
  13. Castro, D., Carrera, C., Gallardo, C., Gonçalves, A. 2017. Functional diets modulate the acute phase protein response in Oncorhynchus mykiss subjected to chronic stress and challenged with Vibrio anguillarum. Fish and Shellfish Immunology, 66, 62-70. https://doi.org/10.1016/j.fsi.2017.05.001
  14. Cortés, M., Sánchez, P., Ruiz, P. Haro, R., Sáez, J., Sánchez, F., Hernández, M., Oliver, C., Yáñez, A.J. 2017. In vitro expression of Sec-dependent pathway and type 4B secretion system in Piscirickettsia salmonis. Microbial Pathogenesis, 110: 586-593 https://doi.org/10.1016/j.micpath.2017.08.003
  15. Détrée, C., Gallardo, C. 2017. Polyethylene induces transcription responses with tissue-dependent patterns in the mussel Mytilus galloprovincialis. Journal of Molluscan Studies, 83(2): 220–225. https://doi.org/10.1093/mollus/eyx005
  16. Détrée, C., López, E., Gallardo, C., Lafarga, F. 2017. Transcriptome mining of immune-related genes in the muricid snail Concholepas concholepas. Fish and Shellfish Immunology, 71: 69-75. http://dx.doi.org/10.1016/j.fsi.2017.06.024
  17. Espinoza, M., Aedo, J., Zuloaga, R., Valenzuela, C., Molina, A., Valdés, J. 2017. Cortisol Induces Reactive Oxygen Species Through a Membrane Glucocorticoid Receptor in Rainbow Trout Myotubes. Journal of Cellular Biochemistry, 118(4), 718-725. https://doi.org/10.1002/jcb.25676
  18. Farlora, R., Valdevenito-Aguayo, F., Valenzuela-Muñoz, V., Gallardo-Escárate, C.2017. Hydrogen peroxide treatment modulates the transcription of sex-related genes in the sea louse Caligus rogercresseyi. Journal of Fish Diseases, 41(6):921-926. https://doi.org/10.1111/jfd.12700
  19. Fuentes, E.N., Zuloaga, R., Almarza, O., Mendez, K., Valdés, J.A., Molina, A., Pulgar, J. 2017. Upwelling-derived oceanographic conditions impact growth performance and growth-related gene expression in intertidal fish. Comparative Biochemistry and Physiology – Part B: Biochemistry & Molecular Biology, 214: 12-18. https://doi.org/10.1016/j.cbpb.2017.09.001.
  20. González-Stegmaier, R., Villarroel-Espindola, F., Manríquez, R., López, M., Monrás, M., Figueroa, J., Enríquez, R., Romero, A. 2017. New inmunomodulatory role of neuropeptide Y (NPY) in the leucocytes of Salmo salar. Developmental and Comparative Immunology, 76: 303-309. https://doi.org/10.1016/j.dci.2017.06.018
  21. Gutiérrez, M.H., Garces, D.V. Pantoja, González, R.R. Quiñones, R.A. 2017. Environmental fungal diversity in the upwelling ecosystem off central Chile and potential contribution to enzymatic hydrolysis of macromolecules in coastal ecotones. Fungal Ecology, 29: 90-95. https://doi.org/10.1016/j.funeco.2017.07.002
  22. Gallardo, C., Valenzuela, V., Boltaña, S., Núñez, G., Valenzuela, D., Gonçalves, A., Détrée, C., Tarifeño, E., Farlora, R., Roberts, S., Putnam, H. 2017. The Caligus rogercresseyi miRNome: discovery and transcriptome profiling during the sea lice ontogeny. Agri Gene, 4: 8-22. https://doi.org/10.1016/j.aggene.2017.03.002
  23. Gonçalves, A., Gallardo, C. 2017. Microbiome dynamic modulation through functional diets based on pre- and probiotics (mannan-oligosaccharides and Saccharomyces cerevisiae) in juvenile rainbow trout (Oncorhynchus mykiss). Journal of Applied Microbiology, 122(5): 1333-1347. https://doi.org/10.1111/jam.13437.
  24. Gonçalves, A., Valenzuela, V., Gallardo, C. 2017. Intestinal transcriptome modulation by functional diets in rainbow trout: a high-throughput sequencing appraisal to highlight GALT immunomodulation. Fish and Shellfish Immunology, 64,325-338.
    https://doi.org/1016/j.fsi.2017.03.022
  25. Hasan, M.R., Soto, S. 2017. Improving feed conversion ratio and its impact on reducing greenhouse gas emissions in aquaculture. FAO Non-Serial Publication. Rome, FAO. 33 pp.
  26. Kampfer, P., Irgang, R., Poblete, M., Glaeser, S., Cortez, M., Avendaño, R. 2017. Psychromonas aquatilis sp. nov. isolated from water samples obtained in the Chilean Antarctica. Int J Syst Evol Microbiol. https://doi.org/10.1099/ijsem.0.001801.
  27. Lagos, F., Cartes, C., Haussmann, D., Figueroa, J. 2017. Identification of genomic islands in Chilean Piscirickettsia salmonis strains and analysis of gene expression involved in virulence.J. of Fish Diseases, https://doi.org/10.1111/jfd.12604
  28. Le Gouvello, R., Hochart, L-E., Laffoley, D., Simard, F., Andrade, C., Angel, D., Callier, M., De Monbrison, D., Fezzardi, D., Haroun, R., Harris, A., Hughes, A., Massa, F., Roque, E., Soto, D., Stead, S., Marino, G. 2017. Aquaculture and marine protected areas: Potential opportunities and synergies. Aquatic Conservation: Marine and Freshwater Ecosystems, 27(1), 138–150. https://doi.org/10.1002/aqc.2821
  29. Levican, A., Lasa, A., Irgang, R., Romalde, J., Poblete, M., Avendaño, R. 2017. Isolation of Vibrio tapetis from two native fish species (Genypterus chilensis and Paralichthys adspersus) reared in Chile and description of Vibrio tapetis subsp. quintayensis subsp. Int J Syst Evol Microbiol, 67(3), 716-723. https://doi.org/10.1099/ijsem.0.001705
  30. Levipan, H., Avendaño, R. 2017. Different phenotypes of mature biofilm in Flavobacterium psychrophilum share a potential for virulence that differs from planktonic state. Front. Cell. Infect. Microbiol., 15, 7-76. https://doi.org/3389/fcimb.2017.00076
  31. López, E., Portillo, A., Gallardo, C., Del Rio Portilla, M. 2017. Sex-related genes expression in juveniles of red abalone, Haliotis rufescens (Swanson, 1822). Invertebrate Reproduction & development, 61, 58-69.
    https://doi.org/10.1080/07924259.2017.1282383
  32. Manríquez, R., Vera, T., Villalba, M., Mancilla, A., Vakharia, V., Yáñez, A., Cárcamo, J. 2017. Molecular characterization of infectious pancreatic necrosis virus strains isolated from the three types of salmonids farmed in Chile. Virology Journal, 14(1):17. https://doi.org/1186/s12985-017-0684-x
  33. Martínez, D., Oyarzún, R., Vargas, C., Pontigo, J., Soto, J., Saravia, A., Romero, J., Núñez, A., Yáñez, J., Vargas, L. 2017. Identification, characterization and modulation of ferritin-H in the sub-Antarctic Notothenioid Eleginops maclovinus challenged with Piscirickettsia salmonis. Developmental and Comparative Immunology, 73, 88-96. https://doi.org/10.1016/j.dci.2017.03.015
  34. Naour, S., Espinoza, B., Aedo, J., Zuloaga, R., Maldonado, J., Bastias, M., Silva, H., Meneses, C., Gallardo, C., Molina, A., Valdés, J. 2017. Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis. PLoS One,12(4): e017644. https://doi.org/10.1371/journal.pone.0176447
  35. Nardocci, G., Simonet, N., Navarro, C., Langst, G., Álvarez, M. 2017. Differential enrichment of TTF-I and Tip5 in the T-like promoter structures of the rDNA contribute to the epigenetic response of Cyprinus carpio during environmental adaptation. Biochem Cell Biol, 94 (4), 315-321. https://doi.org/10.1139/bcb-2016-0015.
  36. Nardocci, G., Simonet, N., Navarro, C., Langst, G., Álvarez, M. 2017. Differential enrichment of TTF-I and Tip5 in the T-like promoter structures of the rDNA contribute to the epigenetic response of Cyprinus carpio during environmental adaptation. Biochem Cell Biol, 94, 315-321. https://doi.org/10.1139/bcb-2016-0015.
  37. Núñez, G., Détrée, C., Gallardo, C., Gonçalves, A. 2017. Functional diets modulate lncRNA-coding RNAs and gene interactions in the intestine of rainbow trout Oncorhynchus mykiss. Marine Biotechnology, 19(3):287-300.
    https://doi.org/10.1007/s10126-017-9750-z.
  38. Peña, J., Dresdner, J., Vásquez, F. 2017. El Niño and Fishing Location Decisions: The Chilean Straddling Jack Mackerel Fishery. Marine Resource Economics, 32(3): 249-275. http://dx.doi.org/10.1086/692073.
  39. Segovia, N., Gallardo, C., Poulin, E., Haye, P. 2017. Lineage divergence, local adaptation across a biogeographic break, and artificial transport, shape the genetic structure in the ascidian Pyura chilensis. Scientific reports, 7: 44559. https://doi.org/10.1038/srep44559
  40. Tarifeño, E., Valenzuela, D., Gallardo, C. 2017. In the shadow: the emerging role of long non-coding RNAs in the immune response of Atlantic salmon. Developmental and Comparative Immunology, 73:193-205. http://dx.doi.org/10.1016/j.dci.2017.03.024
  41. Valenzuela, C., Zuloaga, R., Poblete, M., Vera, T., Mercado, L., Avendaño, R., Valdés, J., Molina, A. 2017. Fish skeletal muscle tissue is an important focus of immune reactions during pathogen infection. Comp. Immunology, 73, 1-9. https://doi.org/10.1016/j.dci.2017.03.004
  42. Valenzuela, D., Asgari, S., Gallardo, C. 2017. Long noncoding RNAs: unexplored players in the drug response of the sea louse Caligus rogercresseyi. Agri Gene, 4, 1-7. https://doi.org/10.1016/j.aggene.2017.03.001
  43. Iturriaga, M., Espinoza, M.B., Poblete-Morales, M., Feijoo, C.G., Reyes, A.E., Molina, A., Avendaño-Herrera, R., Valdés, J.A. 2017. Cytotoxic activity of Flavobacterium psychrophilum in skeletal muscle cells of rainbow trout (Oncorhynchus mykiss). Veterinary Microbiology, 210: 101-106. http://dx.doi.org/10.1016/j.vetmic.2017.09.009
  44. Krautz, M.C., Hernández‑Miranda, E., Veas, R., Bocaz, P., Riquelme, P., Quiñones, R.A. 2017. An estimate of the percentage of non-predatory dead variability in coastal zooplankton of the southern Humboldt Current System. Marine Environmental Research, 132: 103-116 hhttp://dx.doi.org/10.1016/j.marenvres.2017.10.008
  45. Martínez, D., Oyarzún, R., Pontigo, J. P., Romero, A., Yáñez, A.J., Vargas-Chacoff, L. Nutritional Immunity Triggers the Modulation of Iron Metabolism Genes in the Sub-Antarctic Notothenioid Eleginops maclovinus in Response to Piscirickettsia salmonis. Frontiers in Immunology, 8: 1153-2017. http://dx.doi.org/10.3389/fimmu.2017.01153
  46. Montes, R.M., Quiñones, R.A. 2017. Long-range dependence in the runoff time series of the most important Patagonian river draining to the Pacific Ocean. New Zealand Journal of Marine and Freshwater Research, 52: 264-283. http://dx.doi.org/10.1080/00288330.2017.1383278
  47. Nourdin-Galindo1, G., Sánchez, P., Molina, C., Espinoza-Rojas, D., Oliver, C., Ruiz, P., Vargas-Chacoff, L., Cárcamo, J.G.; Figueroa, J., Mancilla, M., Maracaja-Coutinho, V., Yáñez, A.J.2017. Comparative Pan-Genome Analysis of Piscirickettsia salmonis Reveals Genomic Divergences within Genogroups. Frontiers in Cellular and Infection Microbiology, 7:1-16. http://dx.doi.org//10.3389/fcimb.2017.00459
  48. Oliver, C., Hernández, M.A., Tandberg, J.I., Valenzuela, K.N., Lagos, L.X., Haro, R.E., Sanchez, P., Ruiz, P., Sanhueza-Oyarzún, C., Cortés, M.A., Villar, M., Artigues, A., Winther-Larsen, H., Avendaño-Herrera, R, Yáñez, A.2. 2017. The proteome of biologically active membrane vesicles from Piscirickettsia salmonis LF-89 type strain identifies plasmid-encoded putative toxins. Frontiers in Cellular and Infection Microbiol., 7:420. http://dx.doi.org/10.3389/fcimb.2017.00420
  49. Tandberg, J., Oliver, C., Lagos, L., Gaarder, M., Yáñez, A. J., Ropstad, E., Winther-Larsen, H. C. 2017. Membrane vesicles from Piscirickettsia salmonis induce protective immunity and reduce development of salmonid rickettsial septicemia in an adult zebrafish model. Fish and Shellfish Immunology, 67: 189-198. http://dx.doi.org/10.1016/j.fsi.2017.06.015
  50. Valdés, V., Fernández, C., Molina, V., Escribano, R., Joux, F. 2017. Dissolved Compounds Excreted by Copepods Reshape the Active Marine Bacterioplankton Community Composition. Frontiers in Marine Science, 4: 343. http://dx.doi.org/10.3389/fmars.2017.00343
  51. Valenzuela-Miranda, D., Valenzuela-Muñoz, V., Farlora, R., Gallardo-Escárate, C. 2017.MicroRNA-based transcriptomic responses of Atlantic salmon during infection by the intracellular bacterium Piscirickettsia salmonis. Developmental and comparative immunology, 77: 287-296. http://dx.doi.org/10.1016/j.dci.2017.08.016
  52. Valenzuela-Muñoz, V., Boltaña, S., Gallardo-Escárate, C. 2017. Uncovering iron regulation with species-specific transcriptome patterns in Atlantic and coho salmon during a Caligus rogercresseyi Journal of Fish Diseases, 40: 1169-1148. http://dx.doi.org/10.1111/jfd.12592
  53. Valenzuela-Muñoz, V., Novoa, B., Figueras. Gallardo-Escárate, C. 2017. Modulation of Atlantic salmon miRNome response to sea louse infestation. Developmental and comparative immunology, 76: 380-391. http://dx.doi.org/10.1016/j.dci.2017.07.009
  54. Vergara, O.A., Echevín, V., Sepúlveda, H.H., Quiñones, R.A.  2017. Controlling factors of the seasonal variability of productivity in the southern Humboldt Current System (30–40°S): A biophysical modeling approach. Continental Shelf Research. 148: 89-103. http://dx.doi.org/10.1016/j.csr.2017.08.013

Publicaciones No ISI

  1. Aguilar, J., Soto, D., Brummett, R. 2017. Aquaculture zoning, site selection and area management under the ecosystem approach to aquaculture. A handbook. pp.62. Rome: FAO, and World Bank Group, Washington, DC. http://www.fao.org/3/a-i7558e.pdf
  2. Bueno, P., Soto, D. 2017. FAO. 2017. Adaptation Strategies of the Aquaculture Sector to the Impacts of Climate Change. FAO Fisheries and Aquaculture Circular, Rome Italy, 1142, 28. http://www.fao.org/3/a-i7558e.pdf
  3. David, H.F., MacLeod, M., Hasan, M., Soto, D. 2017. Greenhouse gas emissions from aquaculture. A life cycle assessment of three Asian systems. FAO Fisheries and Aquaculture Technical Paper, 1-110. http://www.fao.org/3/a-i7558e.pdf
  4. Elbehri, A., Challinor, A., Verchot, L., Angelsen, A., Hess, T., Ouled, A., Clark, H., Badraoui, M., Cowie, A., De Silva, S., Erickson, J. Joar, S., Iglesias, A., Inouye, D., Jarvis, A., Mansur, E., Mirzabaev, A., Montanarella, L., Murdiyarso, D., Notenbaert, A., Obersteiner, M., Paustian, K., Pennock, D., Reisinger, A., Soto, D., Soussana, J., Thomas, R., Vargas, R., Van Wijk, M., Walker, R. 2017. FAO-IPCC Expert Meeting on Climate Change, Land Use and Food Security: Final Meeting Report. January 23-25, 2017 FAO HQ Rome. FAO and IPCC, Meeting report. http://www.fao.org/3/a-i7068e.pdf
  5. Harvey, B., Soto, D., Carolsfeld, J., Beveridge, M., Bartley, D. 2017. Planning for aquaculture diversification: The importance of climate change and other drivers. Food and Agriculture Organization of the United Nations, 47, 1-166.
    http://www.fao.org/3/a-i7558e.pdf
  6. Hasan, M.R., Soto, S. 2017. Improving feed conversion ratio and its impact on reducing greenhouse gas emissions in aquaculture. FAO Non-Serial Publication. Rome, FAO. 33 pp. http://www.fao.org/3/a-i7558e.pdf
  7. Lagos, F., Cartes, C., Vera, T., Haussmann, D., Figueroa J. 2017. Identificacion de islas genomicas en cepas chilenas de Piscirickettsia salmonis. Salmonexpert, 47, 40-45.
  8. Leggieri, L., De Anna, J., Cerón, G., Arias, L., Fuentes, D., Cárcamo, J., Luquet, C. 2017. CYPs Molecular Biomarkers in Rainbow trout Oncorhynchus mykiss to Assess Oil Contamination in a Patagonian Stream. RICA, 33(4): 681-690. http://dx.doi.org/10.20937/RICA.2017.33.04.11
  9. Toranzo, A.E., Magariños, B., Avendaño, R. 2017. Vibriosis: Vibrio anguillarum, V. ordalii and Aliivibrio salmonicida. Fish Viruses and Bacteria: Pathobiology and Protection. pp. 314-333. Cabi: Woo P and Cipriano RC. http://dx.doi.org/10.1079/9781780647784.0314
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