1. Boltaña, S., Valenzuela-Miranda, D., Aguilar, A., Mackenzie, S., & Gallardo, C. (2016). Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar). Scientific Report. doi: 10.1038/srep22698.
  2. Nuñez, G., Boltaña, S., & Gallardo, C. (2016). Pesticides drive stochastic chemosensory system expression in a marine ectoparasite. International Journal of Molecular Sciences. doi: 10.3390/ijms17060700.
  3. Farlora, R., Valenzuela, V., Chávez, J.,& Gallardo, C. (2016). Aquaporin family genes exhibit developmentally-regulated and host-dependent transcription patterns in the sea louse Caligus rogercresseyi. Gene. doi: 10.1016/j.gene.2016.03.03.
  4. Boltaña, S., Chávez, J., Valenzuela, V., & Gallardo, C. (2016). Evidence for the induction of key components of the Notch signaling pathway via deltamethrin and azamethiphos treatment in the sea louse Caligus rogercresseyi. International Journal of Molecular Science. doi:10.3390/ijms17050304.
  5. Núñez, G., Pino, J., Wadsworth, S., & Gallardo, C. (2016). Antimicrobial peptides from Salmon salar skin induce frontal filament development and olfactory/cuticle-related genes in the sea louse Caligus rogercresseyi. Aquaculture, 464, 171-177.
  6. Pappalardo, P., Pitombo, F., Haye, P.,&  Wares, J. (2016). A rose by any other name: systematics and diversity in the Chilean giant barnacle Austromegabalanus psittacus (Molina, 1782). Journal of Crustacean Biology, 36,180-188.
  7. Valenzuela, D., & Gallardo, C. (2016). Caligus rogercresseyi serine proteases: Transcriptomic analysis in response to delousing drugs treatments. Aquaculture, 465, 67-77.
  8. Carrera, C., Valenzuela, V., Valdés, J., Molina, A., & Gallardo, C. (2016). RNA interference in Haliotis rufescens myostatin evidences upregulation of insulin signaling pathway. AgriGene, 1, 93-99.
  9. Hurtado, L., Mateos, M., Mattos, G., Liu, S., Haye, P., &  Paiva, P. (2016). Multiple transisthmian divergences, extensive cryptic diversity, occasional long-distance dispersal and biogeographic patterns in a marine coastal isopod with an Amphi-American distribution. Ecology and Evolution, 6(21), 7794-7808.
  10. Détrée, C., Núñez, G., Roberts, S., & Gallardo, C.(2016). Uncovering the complex transcriptome response of Mytilus chilensis against saxitoxin: Implications of Harmful algal Blooms on Mussel populations. PlosONE. doi:10.1371/journal.pone.0165231
  11. Pereira, D., Gonçalves, A., Ulloa, V., Martínez, R., Carrasco, H., Olea, A., Espinoza. L., Gallardo, C., & Astuya, A. (2016). In vitro effects of Drimys winteri bark extract and the active compound polygodial on the expression of Atlantic salmon (Salmo salar) immune genes after exposure to Saprolegnia parasitica. Fish and Shellfish inmunology.
  12. Boltaña, S,. Castellana, B.,  Goetz, G., Tort, Ll., Teles, M., Mulero, V., Novoa, B., Figueras, A., Goetz, F., Gallardo, C., Planas, J., & Mackenzie, S. (2016). Extending immunological profiling in the Gilthead Sea bream, Sparus. aurata, by enriched cDNA library analysis, microarray design and initial studies upon the inflammatory Response to PAMPs. International Journal of Molecular Science. doi:10.3390/ijms17101731.
  13. Boltaña, S., Sanchez, M., Valenzuela, V., & C, Gallardo. (2016). Density-dependent effects of Caligus rogercresseyi infestation on the immune responses of Salmo salar. Fish and Shellfish Immunology, 59, 365-374.
  14. Valenzuela, V., Boltaña, S., & Gallardo, C. (2016). Uncovering iron regulation with species-specific transcriptome patterns in Atlantic and coho salmon during the Caligus rogercresseyi infestation. Journal of Fish Disease. doi:10.1111/jfd.12592.
  15. Vorphal, M., Gallardo, C., Valenzuela, V., Dagnino, J., Aleikar, J., Martínez, J., & Bunster, M. (2016). De novo transcriptome analysis of the red seaweed Gracilaria chilensis and identification of linkers associated with phycobilisomes. Marine Genomics.
  16. Valenzuela, V, Boltaña S, & Gallardo, C. (2016). Comparative immunity of Salmo salar and Oncorhynchus kisutch during infestation with the sea louse Caligus rogercresseyi: An enrichment transcriptome analysis. Fish & Shellfish Immunology,9, 276-287.
  17. Valenzuela, V., & Gallardo, C. (2016). Iron metabolism modulation in Atlantic salmon infested with the sea lice Lepeophtheirus salmonis and Caligus rogercresseyi: a matter of nutritional immunity?. Fish and Shellfish Immunology. |
  18. Détrée, C., Núñez, G., Tapia, F., & Gallardo, C.. (2016). Long non-coding RNAs are associated to spatio-temporal related genes in the marine gastropod Tegula atra. Marine Genomics. DOI.10.1016/j.margen.2017.01.002
  19. Valenzuela, D., & Gallardo, C. (2016). Novel insights into the response of Atlantic salmon (Salmo salar) to Piscirickettsia salmonis: Interplay of coding genes and lncRNAs during bacterial infection. Fish and Shellfish Immunology.
  20. Carrera, C., Valenzuela, V., Valdés, A., Molina, A., & Gallardo, C. (2016). RNA interference in Haliotis rufescens myostatin evidences upregulation of insulin signaling pathway. Agri Gene, 1, 93–99.
  21. Espinoza, B., Aedo, J., Zuloaga, R., Valenzuela, C., Molina, A., & Valdés, J. (2016). Cortisol Induces Reactive Oxygen Species Through a Membrane Glucocorticoid Receptor in Rainbow Trout Myotubes. J Cell Biochem, 4, 718-725.
  22. Nardocci, G., Simonet, N., Navarro, C., Langst, G., & Alvarez, M. (2016). Differential enrichment of TTF-I and Tip5 in the T-like promoter structures of the rDNA contribute to the epigenetic response of Cyprinus carpio during environmental adaptation. Biochem Cell Biol,94(4), 315-321
  23. Bethke, J., & Avendaño, R. (2016). Comparative genome analysis of two Streptococcus phocae subspecies provides novel insights into pathogenicity. Mar Genomics,31, 53-61
  24. Kämpfer, P., Irgang, R., Busse, H., Poblete, M., Kleinhagauer, T., Glaeser, S., & Avendaño, R. (2016). Psedoduganella danionis sp. nov. isolated from zebrafish (Danio rerio).Int J Syst Evol Microbiol,66, 4671-4675.
  25. Ortega, C., Mancera, G., Enríquez, R., Vargas, A., Martínez, S., Fajardo, R., Avendaño, R., Navarrete, M., & Romero, A. (2016). First identification of Francisella noatunensis subsp. orientalis causing mortality in Mexican tilapia Oreochromis spp. Dis Aquat Organ,120(3), 205-215.
  26. Bethke, J., Poblete, M., Irgang, R., Yáñez, A., & Avendaño, R. (2016). Iron acquisition and siderophore production in the fish pathogen Renibacterium salmoninarum. Journal of Fish Diseases, 39, 1275- 1283.
  27. Avendaño, R., Irgang, R., Poblete, M., Vásquez, Y., Robles, C., Toro, D., & Cortez, S. (2016). Predominant bacteria associated with black rockcod (Notothenia coriiceps Richarson 1844) from King George Island , Antarctica. Bull Eur Assoc Fish Pathol. 246-255.
  28. Ruiz, P., Poblete, M., Irgang, R., Toranzo, A., & Avendaño, R. (2016). Survival behaviour and virulence of the fish pathogen Vibrio ordalii in seawater microcosm. Dis Aquat Organ, 120(1), 27-38.
  29. Avendaño, R., Irgang, R., Sandoval, C., Moreno, P., Houe, A., Duchaud, E., Poblete, M., Nicolas, P., &  Ilardi, P. (2016). Isolation, Characterization and Virulence Potential of Tenacibaculum dicentrarchi in Salmonid Cultures in Chile, Transboundary and Emerging Diseases, 63, 121-126.
  30. Oliver, C., Valdivia, S., Valenzuela, K., Haro, R., Sanchez, P., Olavarría, V., Valenzuela, P., Avendaño, R,, Romero, A., Cárcamo, J., Figueroa, J., & Yáñez, A. (2016). Characterization and pathogenic role of outer membrane vesicles produced by the fish pathogen Piscirickettsia salmonis under in vitro conditions. Vet Microbiol, 184, 94-101.
  31. Sandoval, R., Oliver, C., Valdivia, S., Valenzuela, K., Haro, R., Sanchez, P., Olavarría, V., Valenzuela, P., Avendaño, R., Romero, A., Cárcamo, J., Figueroa, J., & Yáñez, A. (2016). Resistance-nodulation-division efflux pump acrAB is modulated by florfenicol and contributes to drug resistance in the fish pathogen Piscirickettsia salmonis. FEMS Microbiol Lett, 363(11).
  32. Sandoval, C., Infante, J., Abad, J., Ferguson, H., Paredes, E., Valdebenito, S., Yáñez, A., Ilardi, P., Avendaño, R. (2016). Strawberry Disease in Farmed Chilean Rainbow Trout. J Aquat Anim Health, 26 (11), 1-10.
  33. Salazar, S., Oliver, C., Yáñez, A., & Avendaño,, R. (2016) . Comparative analysis of innate immune responses to Streptococcus phocae strains in Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss). Fish & Shellfish Immunology, 51, 97-103.
  34. Ulloa, P., Solís, C., De la Paz, J., Alaurent, T., Caruffo, M., Hernández, A., Dantagnan, P., & Feijóo, C. (2016). Lactoferrin Decreases the Intestinal Inflammation Triggered by a Soybean Meal-Based Diet in Zebrafish. J Immunol Res.
  35. Sandoval., R., Oliver, C., Valdivia, S., Valenzuela, K., Haro, R., Sánchez, P., Olavarría, V., Valenzuela, P., Avendaño, R, Romero, A, Cárcamo, J., Figueroa, J., & Yáñez, A. (2016). Resistance-nodulation-division efflux pump acrAB is modulated by florfenicol and contributes to drug resistance in the fish pathogen Piscirickettsia salmonis. FEMS Microbiology Letters, 363(11). 
  36. Hernández, A., Romero, A., Gonzalez, R., & Dantagnan, P. (2016). The effects of supplemented diets with a phytopharmaceutical preparation from herbal and macroalgal origin on disease resistance in rainbow trout against Piscirickettsia salmonis. Aquaculture, 454, 109-117.
  37. Cárcamo, J., Aguilar, M., Carreño, C., Vera, T., Arias, L., Figueroa, J., Romero, A., Alvarez, M., & Yañez, A. (2016). Consecutive emamectin benzoate and deltamethrin treatments affect the expressions and activities of detoxification enzymes in the rainbow trout (_Oncorhynchus mykiss_). Comp. Biochem. Physiol., Part C: Toxicol. Pharmacol,191, 129-137.
  38. Salazar, C., Haussmann, D., Kausel, G., & Figueroa, J.(2016). Molecular cloning of Salmo salar Toll-like receptors (TLR1, TLR22, TLR5M and TLR5S) and expression analysis in SHK-1 cells during Piscirickettsia salmonis infection. Journal of Fish Diseases, 39, 239−248
  39. Peña, B., Isla, A., Haussmann, D., & Figueroa, J. (2016). Immunostimulatory effect of salmon prolactin on expression of Toll-like receptors in Oncorhynchus mykiss infected with Piscirickettsia salmonis. Fish Physiol Biochem, 42 (2), 509-516.
  40. Soto, L., Lagos, F., Isla, A., Haussmann, D., & Figueroa, J. (2016). Immunostimulatory effects of prolactin on TLR1 and TLR5 membrane in SHK-1 cells infected with Piscirickettsia salmonis. Diseases of aquatic organisms, 118(3),237- 245.
  41. Pontigo, J.,  Agüero, M.,  Sanchez, R., Oyarzún, C., Vargas, J., Mancilla, H., Kossmann, F.,  Morera, A.,  Yáñez, Y., & Vargas, L.(2016). Identification and expressional analysis of NLRC5 inflammasome gene in smolting Atlantic salmon (Salmo salar). Fish & Shellfish Immunology, 58, 259-265.
  42. Levipan, H., Molina, V., Anguita, C., Rain, A., Belmar, L., & Fernandez, C. (2016). Variaility of nitrifying communities in surface coastal waters of the Eastern South Pacfic (36ºS). Environmental Microbiology Reports. doi:10.1111/1758-2229.12448.
  43. Veas, R., Hernández, E., Martinez, C., Lercari, D., & Quiñones, R. (2016). Spatial-temporal changes of the morphodynamic beach state before and after the 2010 mega-earthquake and tsunami along south-central Chile. New Zealand Journal of Marine and Freshwater Research, 51, 237-253.
  44. Saldías, G., Largier, J., Mendes, R., Pérez, I., Vargas, C., & Sobarzo, M. (2016). Satellite-measured interanual variability of turbid river plumes off central-southern Chile: Spatial patterns and the influence of climate variability. Progress in Oceanograph, 146, 212-222.
  45. Sobarzo, M., Saldías, G., Tapia, F., Bravo, L., Moffat, C., & Largier, J. (2016). On subsurface cooling associated with the Biobio River Canyon (Chile). J. of Geophysical Research – Oceans, 121, 4568-4584
  46. Giacaman, J., Neira, S., & Arancibia., H. (2016). Community structure and trophic interactions in a coastal Management and Exploitation Area for Benthic Resources in Central Chile. Ocean & Coastal Management,119, 155-163.
  47. Saavedra, L., Quiñones, R., & Gonzalez, R. (2016). Aerobic and anaerobic enzyme activity in the hake Merluccius gayi gayi related to the Oxygen Minimun Zone off central-southern Chile. Revista de Biología Marina y Oceanografía,51(3),581-590
  48. Buchan, S., & Quiñones, R. (2016). First insights into the oceanographic characterists of a blue whale feeding ground in northern Patagonia.Marine Ecology Progress Series,554, 183-199
  49. Fuentes, M., & Quiñones, R. (2016). Carbon utilization profile of the filamentous fungal species Fusarium fujikuroi, Penicillium decumbens and Sarocladium strictum isolated from marine coastal environments. Mycologia, 108 (6), 1069-1081.
  50. Vergara, O., Echevin, V., Sepúlveda, H., Colas, F., & Quiñones, R. (2016). Modelling the seasonal dynamics of the Perú-Chile Undercurrent off Central Chile (30- 40°S). Continental Shelf Research,121, 61-79.
  51. Detree, C., Nuñez, G., Tapia, F., & Gallardo, C (2016). Long non-coding RNAs are associated with spatiotemporal gene expression profiles in the marine gastropod Tegula atra. Marine Genomics. doi: 10.1016/j.margen.2017.01.002
  52. Parada, C., Fruster, S., Bustamante, R., Di Lorenzo, E., Bernal, P., Cryer, M., Dunn, A., Garreaud, R., Gutierrez, M., Jennings, S., Montecinos, A., Neira, S., Quiñones, R., Takahashi, K., Tascheri, R., & Yannicelli, B. (2016). South Pacific Integrated Ecosystem Studies meeting: towardconservation and sustainable use of marine resources in the South Pacific. Fisheries Oceanography, 25, 1-4.
  53. Cid, B., & Barriga, J. (2016). Behind certification and regulatory processes: Contributions to a political history of the Chilean salmon farming. Global Environmental Change, 39,81 -090
  54. Caffera, M., & Chávez, C. (2016). “The regulatory choice of noncompliance in the lab: effect on quantities, prices, and implications for the design of a cost-effective policy”. The B.E. Journal of Economic Analysis & Policy,16(2), 727-753
  55. Quezada, F,.&  Dresdner, J. (2016). What Can we Learn from a Sanitary Crisis? The ISA Virus and Market Prices. Aquaculture Economics and Management. doi:10.1080/13657305.2016.118901
  56. Figueroa, Y.,  & Dresdner, J. (2016). Are mussel seed collectors responsive to economic incentives? Empirical evidence from the Benthic Resource Management Areas in Chile. Aquaculture Economics and Management, 20(3), 283 -311.
  57. Dresdner, J., &  Manuel, E. (2016). Biosecurity vs. Profits: A , Multi-Objective Model for the Aquaculture Industry. Journal of the World Aquaculture Society, 47(1), 61 – 73
  58. Avendaño, R., Tapia, D., Aedo, A., Saldivia, P., Ortega, C., & Irgang, R. (2016) Disease caused by Yersinia ruckeri serotype O2b found in Chilean-farmed coho salmon, Oncorhynchus kisutch (Walbaum, 1792). J Fish Dis. doi: 10.1111/jfd.12502. 
  59. Ruiz P, Balado M, Toranzo AE, Poblete-Morales M, Lemos ML, Avendaño-Herrera R. Dis Aquat Organ. (2016). Iron assimilation and siderophore production by Vibrio ordalii strains isolated from diseased Atlantic salmon Salmo salar in Chile,118(3), 217-26. 
  60. Valenzuela, V. & Gallardo, C. (2016). Transcriptome mining: multigene panel to test delousing drug response in the sea louse Caligus rogercresseyi. Marine Genomics, 25,103-13.

Non ISI Publications

  1. Molina, M., & Valdés, J. (2016). Non-genomics mechanisms mediated by  cortisol in the adaptive response to stress in rainbow trout  (Oncorhynchus mykiss). Salmonexpert, 39, 33-37.
  2. Bethle, J., Irgang, R., Poblete, M., Yáñez, A., & Avendaño, R. (2016). Use of antibiotics and vaccines against  BKD: background and projections. Salmonexpert, 40, 42-45.
  3. Oliver, C., Valenzuela, K., Hernández, M., Avendaño, R., & Yáñez, J. (2016). Characterization of the outer membrane vesicles (OMVs) of Piscirickettsia salmonis  and analysis of its citotoxicity. Salmonexpert, 38, 51-56.
  4. Leischner, C., González, R., Pérez, T., Vargas, A., Enríquez, R., Figueroa, J., Kausel, G., & Romero, A. (2016). Density of culture and disease in fishes. Versión Diferente, 25, 20-21.
  5. Castro, L., Lagos, F., Cartes, C., Isla, A., Haussmann, D., & Figueroa, J. (2016). Effect of SNPs on the Antibiotic Resistance of Chilean Straits of Piscirickettsia salmonis. Versión Diferente, 26, 28-30.
  6. Sobarzo, M. (2016). Where does the current go? A contribution to the dialogue between oceanography, aquaculture and coastal communities. Revista Salmonexpert, 43, 62-68.
  7. Sobarzo, M., Tapia, F., & Saldías, G. (2016). Advances on the oceanographic knowledge of the Gulf of Arauco. Revista Versión Diferente, 24, 79-81.
  8. Cid, B., Barriga, J. (2016). Governance and invisibilities: Interests and rationalities in the co-environmental regulation of the salmon production in Chile. Ambiente y Sociedade.