ISI Publications

  1. Valenzuela-Miranda D., Cabrejos M. E, Yañez JM, Gallardo-Escárate C. 2015. From a viral perspective: Infectious salmon anemia virus (ISAV) transcriptome during the infective process in Atlantic salmon (Salmo salar). Marine Genomics.
  2. Farlora R, Nuñez-Acuña G, Gallardo-Escarate C. 2015. Prohibitin-2 gene reveals sex-related differences in the salmon louse Caligus rogercresseyi. Gene. Doi: 10.1016/j.gene.2015.03.045
  3. Maldonado-Aguayo W, Chávez-Mardones J., Gonçalves A. T, Gallardo-Escárate C. 2015. Cathepsin gene family reveals transcriptome patterns related to the infective stages of the salmon louse Caligus rogercressey. PlosOne. DOI:10.1371/journal.pone.0123954
  4. Astuya A, Carrera C, Ulloa V, Aballay A, Nuñez-Acuña G, Hegaret H, Gallardo-Escarate C. 2015. Saxitoxin modulates immunological parameters and gene transcription in Mytilus chilensis hemocytes. International Journal of Molecular Science. Doi:10.3390/ijms160x000x
  5. Valenzuela-Muñoz V, Sturm A, Gallardo-Escarate C. 2015. Transcriptome insights into ABC transporter gene family in the salmon louse Caligus rogercresseyi Parasites & Vectors. DOI:10.1186/s13071-015-0801-x
  6. Valenzuela-Miranda D, Boltaña S, Cabrejos ME, Yañez JM, Gallardo-Escarate C. 2015. High-throughput transcriptome analysis of ISAV-infected Atlantic salmon Salmo salar unravels divergent immune responses associated to head-kidney, liver and gills tissues. Fish and Shellfish Immunology. DOI:10.1016/j.fsi.2015.04.003.
  7. Farlora R, Valenzuela-Miranda D, Alarcón-Matus P, Gallardo-Escarate C. 2015. Identification of miRNAs associated with sexual maturity in rainbow trout brain and testis through small RNA Deep sequencing. Molecular Reproduction and Development. Doi:10.1002/mrd.22499.
  8. Valenzuela-Muñoz V, Chávez-Mardones J, Gallardo-Escarate C. 2015. RNA-Seq analysis evidences a multiple gene responses in Caligus rogercresseyi exposed to organophosphate Azamethiphos. Aquaculture. Doi: 10.1016/j.aquaculture.2015.05.011.
  9. Valenzuela-Miranda D, Del Rio-Portilla M A, Gallardo-Escarate C. 2015. Characterization of the growth-related transcriptome in California red abalone (Haliotis rufescens) through RNA-Seq analysis. Marine Genomics. Doi:10.1016/j.margen.2015.05.009.
  10. Chávez-Mardones J, Valenzuela-Muñoz V, Gallardo-Escarate C. 2015. In silico transcriptome analysis of cuticle-related genes associated with delousing drug responses in the sea louse Caligus rogercresseyi. Aquaculture. Doi:10.1016/j.aquaculture.2015.07.017.
  11. Nuñez-Acuña G, Goncalves AT, Valenzuela-Muñoz V, Pino-Marambio J, Wadsworth S, Gallardo-Escarate C. 2015. Transcriptome immunomodulation of in-feed additives in Atlantic salmon Salmo salar infected with sea lice Caligus rogercresseyi. Fish and Shellfish Immunology. Doi:10.1016/j.fsi.2015.09.009.
  12. Nuñez-Acuña G, Vera-Bizama F, Boltaña S, Hawes C, Pino Marambio J, Wadsworth S, Gallardo-Escárate C. 2015. In-feed additives modulate ionotrophic receptor genes from the sea louse Caligus rogercresseyi: A comparative analysis in two host salmonid species. Aquaculture. Doi:10.1016/j.aquaculture.2015.09.001.
  13. Chávez-Mardones J., Gladys Asencio, Susana Latuz, Gallardo-Escárate C. 2015. Hydrogen peroxide modulates antioxidant system transcription, evidencing sex-dependent responses in Caligus rogercresseyi. Aquaculture Research. DOI: 10.1111/are.12939.
  14. Vera-Bizama F, Valenzuela-Muñoz V., Gonçalves AT, Pino-Marambio J, Hawes C, Wadsworth S, Gallardo-Escárate C. 2015. Transcription expression of immune-related genes from Caligus rogercresseyi, evidences time-dependent patterns on infected Atlantic and Coho salmon. Fish and Shellfish Immunology. DOI: 10.1016/j.fsi.2015.10.022
  15. Retamales A, Zuloaga R, Valenzuela CA, Gallardo-Escárate C, Molina A, Valdes JA. 2015. Insulin-like growth factor-1 suppresses the Myostatin signaling pathway during myogenic differentiation. Biochemical and Biophysical Research Communications. DOI:org/10.1016/j.bbrc.2015.07.018.
  16. Chávez-Mardones, J. & Gallardo-Escárate, C. 2015. Next-generation transcriptome profiling from the salmon louse Caligus rogercresseyi exposed to Deltamethrin (AlphaMaxTM). Discovery of relevant genes and -related differences. Marine Biotechnology. DOI: 10.1007/s10126-015-9661-9.
  17. Valenzuela-Muñoz V, Gallardo-Escárate C. 2015. Transcriptome mining: multigene panel to test delousing drug response in the sea louse Caligus rogercresseyi. Marine Genomics. DOI: 10.1016/j.margen.2015.12.005.
  18. Vargas PV, Arismendi I, Gomez-Uchida D. 2015. Evaluating taxonomic homogenization of freshwater fish assemblages in Chile. Revista Chilena de Historia Natural. DOI: 10.1186/s40693-015-0046-2.
  19. Benavente J, Seeb LW, Seeb JE, Arismendi I, Hernández CE, Gajardo G, Galleguillos R, Cadiz MI, Musleh SS, Gomez-Uchida D. 2015. Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming. PLOsOne. DOI: 10.1371/journal.pone.0142040.
  20. McKinney, GW., LW Seeb, WA Larson, D Gomez-Uchida, MT Limborg, MSO Brieuc, MV Everett, KA Naish, RK Waples, JE Seeb. 2015. An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha). Molecular Ecology Resources. Doi: 10.1111/1755-0998
  21. Aedo JE, Reyes AE, Avendaño-Herrera R, Molina A, Valdés JA. 2015. Bacterial lipopolysaccharide induces rainbow trout myotube atrophy via Akt/FoxO1/Atrogin-1 signaling pathway. Acta Biochim Biophys Sin. 47 932-937
  22. Retamales A, Zuloaga R, Valenzuela CA, Gallardo-Escarate C, Molina A, Valdés JA. 2015. Insulin-like growth factor-1 suppresses the Myostatin signaling pathway during myogenic differentiation. Biochem Biophys Res Commun. 464 596-602
  23. Valenzuela CA, Escobar D, Perez L, Zuloaga R, Estrada JM, Mercado L, Valdés JA, Molina A. 2015. Transcriptional dynamics of immune, growth and stress related genes in skeletal muscle of the fine flounder (Paralichthys adpersus) during different nutritional statuses. Dev Comp Immunol. 53 145-157
  24. Valenzuela CA, Escobar D, Perez L, Zuloaga R, Estrada JM, Mercado L, Valdés JA, Molina A. 2015. The TORC1/P70S6K and TORC1/4EBP1 signaling pathways have a stronger contribution on skeletal muscle growth than MAPK/ERK in an early vertebrate: Differential involvement of the IGF system and atrogenes. Gen Comp Endocrinol. 210 96-106
  25. Solís CJ, Poblete-Morales M, Cabral S, Valdés JA, Reyes AE, Avendaño-Herrera2 R, Feijóo CG. 2015. Neutrophil migration in the activation of the innate immune response to different Flavobacterium psychrophilum vaccines in zebrafish (Danio rerio). J Immunol Res. 2015 :515187
  26. Aedo JE, Maldonado J, Aballai V, Estrada JM, Bastias-Molina M, Meneses C, Gallardo-Escarate C, Silva H, Molina A, Valdés JA. 2015. mRNA-seq reveals skeletal muscle atrophy in response to handling stress in a marine teleost, the red cusk-eel (Genypterus chilensis). BMC Genomics. 16 1024
  27. Levican A, Avendaño-Herrera R. Bacteria associated with mass mortality of post-larvae of red conger eel (Genypterus chilensis) cultured in a Chilean farm. Bulletin of the European Association of Fish Pathologists. 35 162-169
  28. Lasa A, Avendaño-Herrera R, Estrada JM, Romalde JL. 2015. Isolation and identification of Vibrio toranzoniae associated with diseased red conger eel (Genypterus chilensis) farmed in Chile. Veterinary Microbiology. Volume 179, pages 327-331
  29. Avendaño-Herrera R, Suarez R, Lazo E, Bravo D, Llegues KO, Romalde JL, Godoy MG. 2015. Genome sequence of Streptococcus phocae subsp. salmonis strain C-4T isolated from Atlantic salmon (Salmo salar). Genome Announcements. 6 e01269-14
  30. Levican A, Rubio-Arcos S, Martinez-Murcia A, Collado L, Figueras MJ. 2015. Arcobacter ebronensis sp. nov. and Arcobacter aquimarinus sp. nov., two new species isolated from marine environment. Systematic and Applied Microbiology. 38 30-35
  31. Avendaño-Herrera R, Poblete-Morales M. 2015. Genome Sequence of Streptococcus phocae subsp. phocae Strain ATCC 51973T Isolated from a Harbor Seal (Phoca vitulina). Genome Announcements. 3 e01307-15
  32. Salazar C., Haussmann D., Kausel G., Figueroa J. 2015. Molecular cloning of Salmo salar Toll-like receptors (TLR1, TLR22, TLR5M and TLR5S) and expression analysis in SHK-1 cells during Piscirickettsia salmonis infection. Journal of Fish Diseases. DOI: 10.1111/jfd.12354
  33. Peña B., Isla A., Haussmann D., Figueroa J. 2015. Immunostimulatory effect of salmon prolactin on expression of Toll-like receptors in Oncorhynchus mykiss infected with Piscirickettsia salmonis. Fish Physiol Biochem. DOI 10.1007/s10695-015-0155-5 1 a 8
  34. Oliver C., Valenzuela K., Silva H., Haro R.E., Cortes M., Sandoval R., Pontigo J.P., Alvarez C., Figueroa J.E., Avendano-Herrera R., Troncoso J.M. Yanez A.J. 2015. Effectiveness of egg yolk immunoglobulin against the intracellular salmonid pathogen Piscirickettsia salmonis. Journal of Applied Microbiology. doi:10.1111/jam.12857 1 a 12
  35. Oliver C., Valenzuela K., Hernandez M., Sandoval R., Haro R.E., Avendano-Herrera R.,Carcamo J.G., Villar M.T., Artigues A., Garduno R., Yanez A.J. 2015. Characterization and pathogenic role of outer membrane vesicles produced by the fish pathogen Piscirickettsia salmonis under in vitro conditions. Veterinary Microbiology.
  36. Vargas-Chacoff L., Saavedra E., Oyarzun R., Martinez-Montaño E., Pontigo J.P, Yáñez A.J., Ruiz-Jarabo I., Mancera J.M., Ortiz E., Bertrán C. 2015. Effects on the metabolism, growth, digestive capacity and osmoregulation of juvenile of Sub-Antarctic Notothenioid fish Eleginops maclovinus acclimated at different salinities. Fish Physiology and Biochemistry. DOI 10.1007/s10695-015-0092-3 1 a 13
  37. Olavarría V.H., Recabarrena P., Fredericksen F., Villalba M., Yáñez A. 2015. ISAV infection promotes apoptosis of SHK-1 cells through a ROS/p38 MAPK/Bad signaling pathway. Molecular immunology 64 1 a 8
  38. González-Stegmaier R, Guzmán F, Albericio F, Villarroel-Espíndola F, Romero A, Mulero V, Mercado L. 2015. A synthetic peptide derived from the D1 domain of flagellin induced the expression of proinflammatory cytokines in fish macrophages. Fish Shellfish Immunol . 47 239-244
  39. Contreras-Lynch S., Olmos P., Vargas A., Figueroa J., González-Stegmaier R., Enríquez R., Romero A. 2015. Identification and genetic characterization of Piscirickettsia salmonis in native fish from southern Chile. Dis Aquat Organ. 155 233–244
  40. González-Stegmaier R., Romero A., Estepa A., Mulero V., Mercado L. 2015. Effects of recombinant flagellin B and its ND1 domain from Vibrio anguillarum on macrophages from gilthead seabream (Sparus aurata L.) and rainbow trout (Oncorhynchus mykiss W). Fish Shellfish Immunol. 42 144-52
  41. Ruiz P, Poblete M, Yáñez AJ, Irgang R, Toranzo AE, Avendaño-Herrera R. 2015. Cell-surface properties of Vibrio ordalii strains isolated from Atlantic salmon (Salmo salar) in Chilean farms. Dis Aquat Organ. 113(1):9-23. doi: 10.3354/dao02820
  42. Giacaman-Smith J, Neira S, Arancibia H. 2015. Community structure and trophic interactions in a coastal Management and Exploitation Area for Benthic Resources in Central Chile. Ocean & Coastal Management. Volume 119, pages 155-163
  43. Labra FA, Hernández-Miranda E, Quiñones R. 2015. Dynamic relationships between body size, species richness, abundance, and energy use in a shallow marine epibenthic faunal community. Ecology and Evolution. 5 (2) doi: 10.1002/ece3.1343 391-408
  44. Silva F, Hernández-Miranda E, Brante A. 2015. Development and characterization of microsatellite markers for the toadfish Aphos porosus Conservation Genetics Resources 7 (2) DOI: 10.1007/s12686-014-0383-5 411-413
  45. Silva F, Hernández-Miranda E, Brante A. 2015. New polymorphic microsatellite markers for the pelagic fish Normanichthys crockery. Conservation Genetics Resources. 7(2) DOI: 10.1007/s12686-014-0404-4 493- 495
  46. González RR, Himelreichs FA, Cruzat GC, Asencio P, Oyarzún E, Hernández-Miranda E. 2015. Frequent haplotypes of caged Caligus rogercresseyi in the austral south of Chile: The result of a long term serial passage experiment?. Aquaculture. 450 DOI: 143- 153
  47. Dehairs F, Fripiatt F, Cavagna AJ, Trull TW, Fernandez C, Davies D, Roukaerts A, Fonseca Batista D, Planchon F, Elskens M. 2015. Nitrogen cycling in the Southern Ocean Kerguelen Plateau area: evidence for significant surface nitrification from nitrate isotopic compositions. Biogeosciences. 12 Doi: 10.5194/bg-12-1459-2015 1459- 1482
  48. Farias L, Florez-LeivaL, Besoain V, Fernandez C. 2015. Dissolved greenhouse gases (nitrous oxide and methane) associated with the natural iron- fertilized Kerguelen region (KEOPS 2 cruise) in the Southern Ocean. Biogeosciences. 12 Doi: 10.5194/bg-12-1925-2015 1925-1940
  49. Alcamán ME., Fernandez C., Delgado, A., Bergman B., Diez B. 2015. The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring. International Society for Microbial Ecology doi:10.1038/ismej.2015.63 1 a 14
  50. Fernandez C., Gonzalez, ML., Muñoz C., Molina, V., Farias L. 2015. Temporal and spatial variability of biological nitrogen fixation off the upwelling system of central Chile (35–38.5°S). Journal of Geophysical Research. 120:5. doi: 10.1002/2014JC010410 3330-3349
  51. Lara C, Saldías GS, Tapia FJ, Iriarte JL, Broitman BR. 2015. Interannual variability in temporal patterns of Chlorophyll–a and their potential influence on the supply of mussel larvae to inner waters in northern Patagonia (41-44S). Journal of Marine Systems. 155 (doi: 10.1016/j.jmarsys.2015.10.010) 11 al 18
  52. Cavagna AJ, Fripiat F, Elskens M, Mangion P, Chirurgien L, Closset I, Lasbleiz M, Florez-Leiva L, Cardinal D, Leblanc K, Fernandez C, Lefèvre D, Oriol L, Blain S, Quéguiner B, Dehairs F. 2015. Production regime and associated N cycling in the vicinity of Kerguelen Island, Southern Ocean. Biogeosciences 12. doi:10.5194/bg-12-6515-2015 6515-6528
  53. Erika Meerhoff, Fabián Tapia, Marcus Sobarzo & Leonardo Castro. 2015. Influence of estuarine and secondary circulation on crustacean larval fluxes: a case study from a Patagonian fjord. Journal of Plankton Research. Doi: 10.1093/plankt/fbu106 168-182
  54. Saavedra LM, Quiñones RA, Gonzalez-Saldía RR, Niklitschek. 2015. Aerobic and anaerobic enzymatic activity of orange roughy (Hoplostethus atlanticus) and alfonsino (Beryx splendens) from the Juan Fernandez area Fish Physiology and Biochemistry. DOI 10.1007/s10695-015-0181-3
  55. Tapia FJ, Gallardo-Escarate C. 2015. Spatio-temporal transcriptome analysis in the marine snail Tegula atra along central-northern Chile (28-31º). Marine Genomics.
  56. Fuentes ME, Quiñones RA, Gutierrez MH, Pantoja S. 2015. Effects of temperature and glucose concentration on the growth and respiration of fungal species isolated from a highly productive coastal upwelling ecosystem. Fungal Ecology. 13 135- 149
  57. Hernández-Salas, C.R. Seamounts protection in the Pacific Insular Region of Chile. Chinese Journal of International Law. 14 151-176
  58. Jara, Miguel, Jorge Dresdner, and Walter Gómez. 2015. Collective rights in artisanal fisheries and the trade-offs in fisheries policies: An analysis of distributive policies. Estudios de Economía. 42 53- 78
  59. Hernández-Salas, Carlos R. 2015. Distinguished status quo: The American Antarctic Quadrant after submissions to the Commission on the Limits of the Continental Shelf The International Journal of Marine and Coastal Law 30 285-304
  60. Estay Manuel, Chávez C. 2015. Local decisions and regulatory changes: the case of the Chilean aquaculture. Latin American Journal of Aquaculture Research. 43(4) 700-717
  61. Dresdner J, Chávez C, Barriga O. 2015. Compliance in Artisanal Fisheries: Do Morality, Legitimacy and Social Pressure Matter?. Marine Resource Economics. Volume 30, (4), pages 349-370
  62. Salgado H, Chávez C, Miller M, Stranlund J. 2015. ITQ Markets with Administrative Costs: An Application to the Industrial Common Sardine and Anchovy Fishery in Chile. Marine Policy. 62 178-185
  63. Salgado H, Chávez C. 2015. Using Taxes to Deter Illegal Fishing in ITQ Systems. Environmental & Resource Economics. DOI: 10.1007/s10640-0159895-z
  64. Pares C, Dresdner J, Salgado H. 2015. Who Should Set the Total Allowable Catch? Social Preferences and Legitimacy in Fisheries Management Institutions. Marine Policy. 54 36-43
  65. Salgado H, Bailey J, Tiller R, Ellis J. 2015. Stakeholder perceptions of the impacts from salmon aquaculture in the Chilean Patagonia. Ocean and Coastal Management. 118 189-204
  66. Santis O, Chávez C. 2015. Quota compliance in TURFs: An experimental analysis on complementarities of formal and informal enforcement with changes in abundance. Ecological Economics. 120 440-450

Non ISI Publications

  1. Bethke J, Figueroa J, Yañez A, Avendaño-Herrera R. Knowledge perspectives in the genomics era of Piscirickettsia salmonis (In Spanish). Salmonxpert. 4 66-68
  2. Bethke J, Yáñez A, Avendaño-Herrera R Renibacterium salmoninarum and its virulence mechanisms: the new challenge of the Chilean salmon farming industry (In Spanish). Salmonxpert 6 55-57
  3. Feijóo CG, Reyes A, Solís C, Avendaño-Herrera R. The effect of neutrophils migration due the innate immune system activation induced by vaccines against Flavobacterium psychrophilum in zebrafish (In Spanish). Salmonxpert. 5 45-49
  4. Feijóo CG y Reyes AE. A new approach for the improvement of wellbeing of farmed fishes (In Spanish). Versión Diferente. 12 42-45
  5. Muños M., Soto., Lagos F., Haussmann D., Figueroa J. Expression of innate immune system receptors (TLR1, TLR5m, TLR9 y TLR22): key elements in Piscirickettsia salmonis infections (In Spanish). Version Diferente. Year 12, N° 23 38-41
  6. Figueroa J., Haussmann D., Muñoz M., Yañez A., Carcamo, J., Romero A. Role of Toll-like receptors during in vitro infections of atlantic salmon and rainbow trout with Piscirickettsia salmonis (In Spanish). Salmonexpert N° 5 58-61
  7. Vargas-Chacoff L., Yáñez A., Mancilla J., Kossmann H., Morera F.J. Biological bases of smoltification (In Spanish). Salmonexpert. N° 3 20-24
  8. Yáñez A., Nualart D., Sandoval R., Silva H., Oliver C., Avendaño-Herrera R., Mancilla J., Romero A., Figueroa J., Cárcamo J.G. Development of ELISA kits for the evaluation and assessment of commercial vaccines against of P. salmonis used by the salmon farming indusatry (In Spanish). Salmonexpert. N° 4 50-53
  9. Juan Guillermo Cárcamo, Alejandra Mancilla, Daniela Fuentes, Alejandro Yáñez. Development of prototypes of oral supplements of vegetable origin with the capacity to revert the pharmacological resistance of Caligus (In Spanish). Version Diferente Year 12, N° 22 30-34
  10. Cortés D.A., Romero A.P., Enriquez Sais R., Martínez J.S., Santana C. Effect of temperature on the expression of IFN-1(α), STAT-1 and Mx-1 in genes in Oncorhynchus mykiss (Salmoniformes: Salmonidae) exposed with the virus pancreatic necrosis (IPNV). Int. J. Trop. Biol. 63 559- 569
  11. Cid, B y Hinrich, J. Seeds Curators: between strategic empowerment and strategic essentialism (In Spanish). Revista Estudos Feministas. 23 (2) 347 – 370
  12. Cid, B. Peasant economies, forestry industry and fires: socio-natural instabilities and agriculture as means of resistance. REVISTA AMBIENTE & SOCIEDADE. 18 (1) 99- 120
  13. Quezada F, Dresdner J. The Chilean salmon farming industry market power in the United States market (In Spanish). Salmonexpert. 34 58- 62