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PUBLICATIONS 2014

ISI Publications

  1. Alarcón-Matus P., Goncalvez A.T., Valenzuela-MuñozV., and Gallardo-Escarate C. Modulation of insulin-like receptor gene (MdIR) in response to feeding in the surf clam Mesodesma donacium (Lamarck, 1818). Journal of Molluscan Studies. DOI: 10.1093/mollus/eyu050
  2. Morales-Collio K., Valenzuela-Muñoz V., and Gallardo-Escarate C., The Myostatin gene of Argopecten purpuratus (ApMSTN): transcript expression and single-nucleotide polymorphism differences between wild and hatchery-bred populations. Journal of Molluscan Studies. 80(2)
  3. Gallardo-Escarate C., Valenzuela-Muñoz V., Nuñez-Acuña G., RNA-Seq Analysis Using De Novo Transcriptome Assembly as a Reference for the Salmon Louse Caligus rogercresseyi. PLoS One. 9(4)
  4. Gallardo-Escarate C., Valenzuela-Muñoz V., Nuñez-Acuña G., Chávez-Mardones J., and Maldonado – Aguayo W.,. Transcriptome analysis of the couch potato (CPO) protein reveals an expression pattern associated with early development in the salmon louse Caligus rogercresseyi. Gene. 536(1)
  5. Nuñez-Acuna G., Valenzuela-Muñoz V., Gallardo-Escarate C. High-throughput SNP discovery and transcriptome expression profiles from the salmon louse Caligus rogercresseyi (Copepoda: Caligidae). Comparative Biochemistry and Physiology D. 10
  6. Valenzuela-Munoz V., Nunez-Acuna G. And Gallardo-Escarate C. Molecular Characterization and Transcription Analysis of P-Glycoprotein Gene from the Salmon Louse Caligus rogercresseyi. Journal of Aquaculture Research and Development. 5(4)
  7. Valenzuela-Munoz V. And Gallardo-Ecarate C. TLR and IMD signaling pathways from Caligus rogercresseyi (Crustacea: Copepoda): in silico gene expression and SNPs discovery. Journal of Fish and Shellfish Immunology. 36(2)
  8. Chavez-Mardones J. And Gallardo-Escarate C. Deltamethrin (AlphaMax™) reveals modulation of genes related to oxidative stress in the ectoparasite Caligus rogercresseyi: Implications on delousing drug effectiveness. Aquaculture. 433
  9. Maldonado-Aguayo W. And Gallardo-Escarate C. Increasing transcriptome response of serpins during the ontogenetic stages in the salmon louse Caligus rogercresseyi (Copepoda: Caligidae). Marine Genomics. 15
  10. Gonçalves A.T., Farlora R. And Gallardo-Escarate C. Transcriptome survey of the lipid metabolic pathways involved in energy production and ecdysteroid synthesis in the salmon louse Caligus rogercresseyi (Crustacea: Copepoda). Comparative Biochemistry and Physiology B. 176
  11. Farlora R., Araya-Garay J. And Gallardo-Escarate C. Discovery of sex-related genes through high-throughput transcriptome sequencing from the salmon louse Caligus rogercresseyi. Marine Genomics. 15
  12. Chavez-Mardones J. And Gallardo-Escarate C. Immune response of apoptosis-related cysteine peptidases from the red abalone Haliotis rufescens (HrCas8 and HrCas3): Molecular characterization and transcription expression. Journal of Fish and Shellfish Immunology. 39(1)
  13. Maldonado-Aguayo W., Teneb J. And Gallardo-Escarate C. A galectin with quadruple-domain from red abalone Haliotis rufescens involved in the immune innate response against to Vibrio anguillarum. Journal of Fish and Shellfish Immunology. 40(1)
  14. Nunez-Acuna G., Valenzuela-Munoz V., Marambio J.P., Wadsworth S. And Gallardo-Escarate C. Insights into the olfactory system of the ectoparasite Caligus rogercresseyi: Molecular characterization and gene transcription analysis of novel ionotropic receptors. Experimental Parasitology. 145
  15. Chovar-Vera O., Valenzuela-Munoz V. And Gallardo-Escarate C. Molecular characterization of collagen IV evidences early transcription expression related to the immune response against bacterial infection in the red abalone (Haliotis rufescens). Journal of Fish and Shellfish Immunology. 42
  16. Lopez-Landavery E.A., Portillo-Lopez A., Gallardo-Escarate C. And Rio-Portilla M.A. Selection of reference genes as internal controls for gene expression in tissues of red abalone Haliotis rufescens (Mollusca, Vetigastropoda; Swainson, 1822). Gene. 549(2)
  17. Valenzuela-Miranda D., Nunez-Acuna G., Valenzuela-Munoz V., Asgari S. And Gallardo-Escarate C. MicroRNA biogenesis pathway from the salmon louse (Caligus rogercresseyi): Emerging role in delousing drug response. Gene. 555(2)
  18. Correa K., Flip M.,Cisterna D., Cabrejos M.E., Gallardo-Escarate C. And Yanez J.M. Effect of triploidy in the expression of immune-related genes in coho salmon Oncorhynchus kisutch (Walbaum) infected with Piscirickettsia salmonis. Aquaculture Research. DOI:10.1111/are.12584
  19. Valenzuela-Miranda D., Gallardo-Escarate C., Valenzuela-Munoz V., Farlora R. And Gajardo G. Sex-dependent transcriptome analysis and single nucleotide polymorphism (SNP) discovery in the brine shrimp Artemia franciscana. Marine Genomics. 18
  20. Gomez-Uchida D., Seeb L.W., Warheit K.I., Mckinney G.J. And Seeb J.E. Deep sequencing of the transcriptome and mining of single nucleotide polymorphisms (SNPs) provide genomic resources for applied studies in Chinook salmon (Oncorhynchus tshawytscha). Conservation Genetics Resources. 6(4)
  21. Arismendi I., Penaluna B.E., Dunham J.B., Leaniz C.G., Soto D., Fleming I.A., Gomez-Uchida D., Gajardo G., Vargas, P.V. And Leon-Munoz J. Differential invasion success of salmonids in southern Chile: patterns and hypotheses. Reviews in Fish Biology and Fisheries. Reviews in Fish Biology and Fisheries. 24(3)
  22. Gaitan-Espitia J.D., Bacigalupe L.D., Opitz T., Lagos N.A., Timmermann T. And Lardies M.A. Geographic variation in thermal physiological performance of the intertidal crab Petrolisthes violaceus along a latitudinal gradient. Journal of Experimental Biology. 217
  23. Lardies M., Arias M.B., Poupi M. J., Manriquez P. H., Torres T., Vargas C.A., Navarro J.M. And Lagos N.A. Differential response to ocean acidification in physiological traits of Concholepas concholepas populations. Journal of Sea Research. 90
  24. Haye P.A., Segovia N.I., Munoz-Herrera N.C., Galvez F.E., Martinez A.- Meynard A., Pardo-Gandarillas M.C., Poulin E. And Faugeron S. Phylogeographic Structure in Benthic Marine Invertebrates of the Southeast Pacific Coast of Chile with Differing Dispersal Potential. PLoS One. 9(2)
  25. Segovia N.I., Vasquez J.A., Faugeron S. And Haye P.A. On the advantage of sharing a holdfast: effects of density and occurrence of kin aggregation in the kelp Lessonia berteroana. Marine Ecology. DOI: 10.1111/maec.12206
  26. Haye P.A. And Munoz-Herrera N.C. Isolation with differentiation followed by expansion with admixture in the tunicate Pyura chilensis. BMC Evolutionary Biology. 13(252)
  27. Haye P.A. And Gallardo-Escarate C. Transcriptome characterization of the ascidian Pyura chilensis using 454-pyrosequencing data from two distant localities on the southeast Pacific. Marine Genomics. In press
  28. Maldonado-Aguayo M. Lafarga-De La Cruz F. And Gallardo-Escarate C. Identification and expression of antioxidant and immune defense genes in the surf clam Mesodesma donacium challenged with Vibrio anguillarum. Marine Genomics. In press.
  29. Nunez-Acuna G. And Gallardo-Escarate C. Two novel male-associated peroxinectin genes are downregulated by exposure to delousing drugs in Caligus rogercresseyi. Gene. 557(1)
  30. Macqueen D.J., Fuentes E.N., Valdes J.A., Molina A. And Martin A.M. The vertebrate muscle-specific RING finger protein family includes MuRF4 – A novel, conserved E3-ubiquitin ligase. FEBS Letters. 588
  31. Fuentes E.N., Zuloaga R., Nardocci G., Reguera C.F., Simonet N., Fumeron R., Valdes J.A., Molina A. And Alvarez M. Skeletal muscle plasticity induced by seasonal acclimatization in carp involves differential expression of rRNA and molecules that epigenetically regulate its synthesis. Comparative Biochemistry and Physiology B. 172/173
  32. Fuentes E.N., Zuloaga R., Valdes J.A., Molina A. And Alvarez M. Skeletal muscle plasticity induced by seasonal acclimatization involves IGF1 signaling: Implications in ribosomal biogenesis and protein synthesis. Comparative Biochemistry and Physiology B. 176
  33. Galdames J.A., Traslavina C.Z., Reuyes A.E. And Feijoo C.G. Gcsf-Chr19 Promotes Neutrophil Migration to Damaged Tissue through Blood Vessels in Zebrafish. Journal of Immunology. 193(1)
  34. Fisher J.C., Levican A., Figueras M.J. And Mclellan S.L. Population dynamics and ecology of Arcobacter in sewage. Frontiers in Microbiology. 5(525)
  35. Avendano-Herrera R., Ceballos C., Ramírez L., Poblete-Morales M. And Irgang R. Flavobacterium chilense and Flavobacterium spartansii, two novel non-pathogenic species to rainbow trout (Oncorhynchus mykiss, Walbaum). Bulletin of the European Association of Fish Pathologists. 34
  36. Avendano-Herrera R., Houel A., Irgang R., Bernadet J.F., Godoy M. And Duchaud E. Introduction, expansion and coexistence of epidemic Flavobacterium psychrophilum lineages in Chilean fish farms. Veterinary Microbiology. 170(3-4)
  37. Avendano-Herrera R., Balboa S., Castro N., Gonzalez-Contreras A., Magarinos B., Fernandez J., Toranzo A.E. And Romalde J.L. Comparative polyphasic characterization of Streptococcus phocae strains with different host origin and description of the subspecies Streptococcus phocae subsp. salmonis subsp. nov. International Journal of Systematic and Evolutionary Microbiology. 64
  38. Avendano-Herrera R., Maldonado J.P., Cammas D.T., Feijoo C.G., Calleja F. And Toranzo A.E. PCR protocol for detection of Vibrio ordalii by amplification of the vohB (hemolysin) gene. Diseases of Aquatic Organims. 107
  39. Aedo J.E., Maldonado J., Estrada J.M., Fuentes E.N., Silva H., Gallardo-Escarate C., Molina A. And Valdes J.A. Sequencing and de novo assembly of the red cusk-eel (Genypterus chilensis) transcriptome. Marine Genomics. 18
  40. Yanez A., Valenzuela K., Matzner C.,Olavarria V., Figueroa J., Avendano-Herrera R. And Carcamo J.G. Broth microdilution protocol for minimum inhibitory concentration (MIC) determinations of the intracellular salmonid pathogen Piscirickettsia salmonis to florfenicol and oxytetracycline. Journal of Fish Diseases. 37(5)
  41. Levican A., Rubio-Arcos S., Martinez-Murcia A., Collado L. And Figueras M.J. Arcobacter ebronensis sp. nov. and Arcobacter aquimarinus sp. nov., two new species isolated from marine environment. Systematic and Applied Microbiology. In press.
  42. Rodriguez Saint-Jean S., Gonzalez C., Monras M., Romero A., Ballesteros N., Enruquez R. And Perz-Prieto S. Establishment and characterization of a new cell line (SSP-9) derived from Atlantic salmon Salmo salar that expresses type I if n. Journal of Fish Biology. 85(5)
  43. Isla A., Haussmann D., Vera T., Kausel G. And Figueroa J. Identification of the clpB and bipA genes and an evaluation of their expression as related to intracellular survival for the bacterial pathogen Piscirickettsia salmonis. Veterinary Microbiology. 173 (3-4)
  44. Yanez A.J., Molina C., Haro R.E., Sanchez P., Isla A., Mendoza J., Rojas-Herrera M., Trombert A., Silva A.X., Carcamo J.G., Figueroa J., Polanco V., Manque P., Maracaja-Coutinho V. And Olavarria V.H. Draft Genome Sequence of Virulent Strain AUSTRAL-005 of Piscirickettsia salmonis, the Etiological Agent of Piscirickettsiosis. Genome Announcements. 2(5)
  45. Valenzuela G.E., Perz A., Navarro M., Romero A., Figueroa J. And Kausel G. Differential response of two somatolactin genes to zinc or estrogen in pituitary of Cyprinus carpio. General and Comparative Endocrinology. In press
  46. Carcamo J.G., Aguilar M.N., Barrientos C.A., Carreno C.F. And Yanez A.J. Emamectin benzoate treatment alters the expression and activity of CYP1A, FMO and GST in different tissues of rainbow trout (Oncorhynchus mykiss). Aquaculture. 434
  47. Vargas-Chacoff L., Martinez D., Oyarzun R., Nualart D., Olavarria V., Yanez A., Bertran C., Ruiz-Jarabo I. And Macera J.M. Combined effects of high stocking density and Piscirickettsia salmonis treatment on the immune system, metabolism and osmoregulatory responses of the Sub-Antarctic Notothenioid fish Eleginops maclovinus. Journal of Fish and Shellfish Immunology. 40(2)
  48. Vargas-Chacoff L., Ortiz E., Oyarzun R., Martinez D., Saavedra E., Sa R., Olavarria V., Nualart D., Yanez A., Bertran C. And Macera J.M. Stocking density and Piscirickettsia salmonis infection effect on Patagonian blennie (Eleginops maclovinus, Cuvier 1830) skeletal muscle intermediate metabolism. Journal of Fish Physiology and Biochemistry. 40
  49. Stegmaier R.G., Romero A., Estepa A., Montero J., Mulero V. And Mercado L. Effects of recombinant flagellin B and its ND1 domain from Vibrio anguillarum on macrophages from gilthead seabream (Sparus aurata L.) and rainbow trout (Oncorhynchus mykiss, W.). Journal of Fish and Shellfish Immunology. 42(1)
  50. Ortega C., Rodriguez S., Espinoza J.C., Kuznar J., Romero A. And Enriquez R. Relationship between apoptosis and the BH2 domain sequence of the VP5 peptide of infectious pancreatic necrosis virus. MVZ Córdoba. 19(1)
  51. Hernandez-Miranda E., Cisterna J., Diaz-Cabrera E., Veas R. And Quinones R.A. Epibenthic macrofaunal community response after a mega-earthquake and tsunami in a shallow bay off central-south Chile. Marine Biology. 161(3)
  52. Fuentes M.E., Quinones R.A., Gutierrez M.H. And Pantoja S. Effects of temperature and glucose concentration on the growth and respiration of fungal species isolated from a highly productive coastal upwelling ecosystem. Fungal Ecology. 13
  53. Jacob B. G., Tapia F.J., Daneri G., Iriarte J.L., Montero P., Sobarzo M. And Quinones R.A. Springtime size-fractionated primary production across hydrographic and PAR-light gradients in Chilean Patagonia (41–50°S). Progress in Oceanography. 129
  54. Rain-Franco A., Munoz C. And Fernandez C. Ammonium Production off Central Chile (36°S) by Photodegradation of Phytoplankton-Derived and Marine Dissolved Organic Matter. Plos One. 9(6)
  55. Dehairs F., Fripiatt F., Cavagna Aj., Trull T.W., Fernandez C., Davies D., Roukaerts A., Batista F.D., Planchon F. And Elskens M. Nitrogen cycling in the Southern Ocean Kerguelen Plateau area: evidence for significant surface nitrification from nitrate isotopic compositions. Biogeosciences Discussions. 11
  56. Farias L., Florez-Leiva L., Besoain V. And Fernandez C. Dissolved greenhouse gases (nitrous oxide and methane) associated with the natural iron-fertilized Kerguelen region (KEOPS 2 cruise) in the Southern Ocean. Biogeosciences Discussions. 11
  57. Perez G., Farias L., Fernandez C., Conde D. And Piccini C. Incidence of phytoplankton and environmental conditions on the bacterial ammonium uptake in a subtropical coastal lagoon. Journal of Limnology. 73(1)
  58. Levipan H., Molina V. And Fernandez C. Nitrospina-like bacteria are the main drivers of nitrite oxidation in the seasonal upwelling area of the Eastern South Pacific (Central Chile 36°S). Environmental Microbiology Reports. 6(6)
  59. Bandin R. And Quinones R.A. Impact of illegal catch in artisanal benthic fisheries under co-management regime: the case of Mocha Island, Chile. Latin American Journal of Aquatic Research. 42(3)
  60. Veas R., Hernandez-Miranda E. And Quinones R.A. Body shape and burial behavior of the sand crab Emerita naloga (Stimpson 1857) in a reflective to intermediate morphodynamic range of sandy beaches. Marine Biology. 161(10)
  61. Saavedra L., Quinones R.A. And Becerra J. Distribution and sources of phytosterols in coastal and river sediments of South-central Chile. Latin American Journal of Aquatic Research. 42(1)
  62. Munoz L., Pavez G., Quinones R.A., Oliva D., Santos M. And Sepulveda M. Diet plasticity of the South American sea lion in Chile: stable isotope evidence. Revista de Biología Marina y Oceanografía. 48(3)
  63. Silva F., Hernandez-Miranda E. And Brante A. Development and characterization of microsatellite markers for the toadfish Aphos porosus. Conservation Genetics Resources. In press
  64. Neira S., Moloney C., Christensen V., Shannon L., Jarre A. And Arancibia H. Assessing changes in the southern Humboldt in the 20th century using food web models. Ecological Modelling. 278
  65. Barros M., Neira S. And Arancibia H. Trophic interactions in northern Chile upwelling ecosystem, year 1997. Latin American Journal of Aquatic Research. 42(5)
  66. Meerhoff E., Tapia F., Sobarzo M. And Castro L. Influence of estuarine and secondary circulation on crustacean larval fluxes: a case study from a Patagonian fjord. Journal of Plankton Research. fbu106v1-fbu106.
  67. Cavagna A.J., Lefèvre D., Elskens M., Dehairs F., Fripiat F., Chirurgien L., Mangion P., Closset I., Laslbleiz M., Flores-Leiva L., Cardinal D., Leblanc K., Fernandez C., Oriol L., Blain S. And Queguine B. Biological productivity regime and associated N cycling in the vicinity of Kerguelen Island area, Southern Ocean. Biogeosciences Discussions. 11
  68. Gonzalez M. L. , Molina V., Florez-Leiva L., Oriol L., Cavagna A.J., Dehairs F., Farias L. And Fernandez C. Nitrogen fixation in the Southern Ocean: a case of study of the Fe-fertilized Kerguelen region (KEOPS II cruise). Biogeosciences Discuss. 11
  69. Silva F., Hernandez-Miranda E. And Brante A. New polymorphic microsatellite markers for the pelagic fish Normanichthys crockeri. Conservation Genetics Resources. DOI:10. 1007/s 12686-014-0404-4
  70. Labra F.A., Hernandez-Miranda E. And Quinones R.A. Dynamic relationships between body size, species richness, abundance, and energy use in a shallow marine epibenthic faunal community. Ecology and Evolution. Doi:10. 1002/ece3. 1343
  71. Gomez W., Salgado H., Vasquez F. And Chavez C. Using stated preference methods to design cost-effective subsidy programs to induce technology adoption: An application to a stove program in southern Chile. Journal of Environmental Management. 132.
  72. Rosas J., Dresdner J., Chavez C. And Quiroga M. Effect of social networks on the economic performance of TURFs: The case of the artisanal fisherman organizations in Southern Chile. Ocean and Coastal Management. 88C.
  73. Santis O. And Chavez C. Extraction of natural resources in contexts of abundance and scarcity: An experimental analysis on non-compliance with quotas in management and exploitation areas of benthic resources in central-southern Chile. Estudios de Economia. 41(1).
  74. Quezada F. And Dresdner J. The behavior of hake prices in Chile: is the world market leading?. Latin American Journal of Aquatic Research. 42(5)

Non ISI Publications

  1. Cabrera H.S. Navarro M.G. A Corporate Social Responsibility Index for the Salmon Aquaculture Industry in Chile – (in spanish). Revista Interamericana de Ambiente y Turismo. 9(2)
  2. Tiller R., Richards R.G. Salgado H., Strand H. Moe E and Ellis J. Assessing Stakeholder Adaptive Capacity to Salmon Aquaculture in Norway. Consilience. 11(1)